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The map label for this gene is ybdL [C]

Identifier: 16126694

GI number: 16126694

Start: 2662150

End: 2663295

Strand: Direct

Name: ybdL [C]

Synonym: CC_2455

Alternate gene names: 16126694

Gene position: 2662150-2663295 (Clockwise)

Preceding gene: 16126692

Following gene: 16126696

Centisome position: 66.27

GC content: 67.36

Gene sequence:

>1146_bases
ATGCGCGCCGAGATCGAACCCTTCCACGCCATCGCCATCAGCCGTCTGGCCCACCAGCTGAAGATGGAGGGGCGCTCGAT
CATCCATATGGAGTTTGGCCAGCCCTCGACCGGCGCGCCGAGCAAGGCCCTGGCCAAGGCGCATGACATTCTCGACGCCG
AAGCCATGGGCTATTGGGAAAGCCCGCTGCTGCGCGAGAAGATCGCCCAGCGCTATCAGACCCTGTACGGCGTCACCGTC
GAGCCCGAGCGGATCATCCTGACCTGCGGCGCCTCACCGGCCCTGGTGCTGGCGCTGTCCAGCCTGTTCAAGCCCGGCGA
CCGCATCGCCCTGGCCCGCCCTGGCTATGTCGCCTATCGCAACACGCTGAAGGCCCTGCACCTGGAGCCGGTCGAGATCG
CCTGCGGCCCCGAAGACCGTTTCCAGCTGACGGCCAAGCACCTGGCCGACCTAGAACCCGCTCCCGTCGGCGTCATCGTC
GCCAGTCCGGCCAATCCGACCGGCACGATCATCGAACCCGCCGAACTGGAAGCCATCGCCAAGGTCTGCGCCGCGCGCGG
CATCCGGATCATCAGCGACGAGATCTATCACGGGCTGTCGTACGCGGGCCGCACGCCCTCGATGCTGGAGTTCGCCCCCG
ACGCCCTGATCGTCAACAGCTTCTCCAAGTACTTCAGCATGGCCGGCTGGCGCCTGGGCTGGCTGCTGACCCCGCCGGGC
GAGGATCTTGACCGGGCGCGCGCCTATGTCGGCAACCTGTTTCTGACCGCGCCTTCGCTGGCCCAGCACGCGGGCCTGGC
GGCCATGGACTGCATCGATGAGCTGGAAGGCCATATCGACGTCTATCGCGCCAACCGCCAGTTGATGCTCGACGCCCTGC
CGGCCCTGGGCCTTAAGGAGATCGCGCCGCCGGACGGGGCCTTCTACATCTGGGCCAATATCGCCCACCTGACCGACGAC
TCGCTGGGCTTCTGCGAGGACCTGCTGCGCGACACGGGCGTTGCGACCGCCCCGGGCGTCGACTTCGACCCGGTCGAGGG
TAAGCGCTTCATCCGCTTCAGCTTCGCGGTCTCGACGCCCGAGGTCGAAGAGGCCCTGCGGCGGATCACGCCGTGGTTCG
AGGCGCGTACGGCTAGCGCAGCATAA

Upstream 100 bases:

>100_bases
AGCAAAAGACGCATGGCCGTTTGATGCCACGCGCCACGACGATGTTCCAGACTCGATCTGCGAGGCTGCCATCGCCGCCG
AACTTGGCTATGCAATCGTC

Downstream 100 bases:

>100_bases
AAATCCTCCCCCTCGCGGGGGAGGTGTCGGCTCGAAGAGACGACGGAGGGGGAAGAGGCCGGGCCAGGACTTGTTCCCCC
TCCGGCGCTTCGCGCCACCT

Product: class I aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MRAEIEPFHAIAISRLAHQLKMEGRSIIHMEFGQPSTGAPSKALAKAHDILDAEAMGYWESPLLREKIAQRYQTLYGVTV
EPERIILTCGASPALVLALSSLFKPGDRIALARPGYVAYRNTLKALHLEPVEIACGPEDRFQLTAKHLADLEPAPVGVIV
ASPANPTGTIIEPAELEAIAKVCAARGIRIISDEIYHGLSYAGRTPSMLEFAPDALIVNSFSKYFSMAGWRLGWLLTPPG
EDLDRARAYVGNLFLTAPSLAQHAGLAAMDCIDELEGHIDVYRANRQLMLDALPALGLKEIAPPDGAFYIWANIAHLTDD
SLGFCEDLLRDTGVATAPGVDFDPVEGKRFIRFSFAVSTPEVEEALRRITPWFEARTASAA

Sequences:

>Translated_381_residues
MRAEIEPFHAIAISRLAHQLKMEGRSIIHMEFGQPSTGAPSKALAKAHDILDAEAMGYWESPLLREKIAQRYQTLYGVTV
EPERIILTCGASPALVLALSSLFKPGDRIALARPGYVAYRNTLKALHLEPVEIACGPEDRFQLTAKHLADLEPAPVGVIV
ASPANPTGTIIEPAELEAIAKVCAARGIRIISDEIYHGLSYAGRTPSMLEFAPDALIVNSFSKYFSMAGWRLGWLLTPPG
EDLDRARAYVGNLFLTAPSLAQHAGLAAMDCIDELEGHIDVYRANRQLMLDALPALGLKEIAPPDGAFYIWANIAHLTDD
SLGFCEDLLRDTGVATAPGVDFDPVEGKRFIRFSFAVSTPEVEEALRRITPWFEARTASAA
>Mature_381_residues
MRAEIEPFHAIAISRLAHQLKMEGRSIIHMEFGQPSTGAPSKALAKAHDILDAEAMGYWESPLLREKIAQRYQTLYGVTV
EPERIILTCGASPALVLALSSLFKPGDRIALARPGYVAYRNTLKALHLEPVEIACGPEDRFQLTAKHLADLEPAPVGVIV
ASPANPTGTIIEPAELEAIAKVCAARGIRIISDEIYHGLSYAGRTPSMLEFAPDALIVNSFSKYFSMAGWRLGWLLTPPG
EDLDRARAYVGNLFLTAPSLAQHAGLAAMDCIDELEGHIDVYRANRQLMLDALPALGLKEIAPPDGAFYIWANIAHLTDD
SLGFCEDLLRDTGVATAPGVDFDPVEGKRFIRFSFAVSTPEVEEALRRITPWFEARTASAA

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=384, Percent_Identity=26.0416666666667, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI56713256, Length=392, Percent_Identity=24.4897959183673, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI56713254, Length=392, Percent_Identity=24.4897959183673, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI95147551, Length=363, Percent_Identity=22.8650137741047, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI169881279, Length=363, Percent_Identity=22.8650137741047, Blast_Score=87, Evalue=4e-17,
Organism=Escherichia coli, GI1786816, Length=328, Percent_Identity=27.7439024390244, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788722, Length=383, Percent_Identity=25.065274151436, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787710, Length=317, Percent_Identity=27.1293375394322, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788627, Length=354, Percent_Identity=26.271186440678, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790797, Length=274, Percent_Identity=29.5620437956204, Blast_Score=75, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17567663, Length=368, Percent_Identity=25.5434782608696, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71994476, Length=314, Percent_Identity=25.4777070063694, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994472, Length=314, Percent_Identity=25.4777070063694, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17567369, Length=268, Percent_Identity=22.3880597014925, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322401, Length=387, Percent_Identity=22.2222222222222, Blast_Score=94, Evalue=4e-20,
Organism=Drosophila melanogaster, GI18859735, Length=392, Percent_Identity=22.7040816326531, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28573069, Length=341, Percent_Identity=22.2873900293255, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24646114, Length=341, Percent_Identity=22.2873900293255, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28573067, Length=341, Percent_Identity=22.2873900293255, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28573065, Length=341, Percent_Identity=22.2873900293255, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 41514; Mature: 41514

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEIEPFHAIAISRLAHQLKMEGRSIIHMEFGQPSTGAPSKALAKAHDILDAEAMGYWE
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
SPLLREKIAQRYQTLYGVTVEPERIILTCGASPALVLALSSLFKPGDRIALARPGYVAYR
CHHHHHHHHHHHHHHHCCEECCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHH
NTLKALHLEPVEIACGPEDRFQLTAKHLADLEPAPVGVIVASPANPTGTIIEPAELEAIA
HHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHHHH
KVCAARGIRIISDEIYHGLSYAGRTPSMLEFAPDALIVNSFSKYFSMAGWRLGWLLTPPG
HHHHHCCCEEEHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCC
EDLDRARAYVGNLFLTAPSLAQHAGLAAMDCIDELEGHIDVYRANRQLMLDALPALGLKE
CHHHHHHHHHHHHEEECCHHHHHCCHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCHHH
IAPPDGAFYIWANIAHLTDDSLGFCEDLLRDTGVATAPGVDFDPVEGKRFIRFSFAVSTP
CCCCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCH
EVEEALRRITPWFEARTASAA
HHHHHHHHCCCHHHCCCCCCC
>Mature Secondary Structure
MRAEIEPFHAIAISRLAHQLKMEGRSIIHMEFGQPSTGAPSKALAKAHDILDAEAMGYWE
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
SPLLREKIAQRYQTLYGVTVEPERIILTCGASPALVLALSSLFKPGDRIALARPGYVAYR
CHHHHHHHHHHHHHHHCCEECCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHH
NTLKALHLEPVEIACGPEDRFQLTAKHLADLEPAPVGVIVASPANPTGTIIEPAELEAIA
HHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEECHHHHHHHH
KVCAARGIRIISDEIYHGLSYAGRTPSMLEFAPDALIVNSFSKYFSMAGWRLGWLLTPPG
HHHHHCCCEEEHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCC
EDLDRARAYVGNLFLTAPSLAQHAGLAAMDCIDELEGHIDVYRANRQLMLDALPALGLKE
CHHHHHHHHHHHHEEECCHHHHHCCHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCHHH
IAPPDGAFYIWANIAHLTDDSLGFCEDLLRDTGVATAPGVDFDPVEGKRFIRFSFAVSTP
CCCCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCH
EVEEALRRITPWFEARTASAA
HHHHHHHHCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]