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The map label for this gene is yjcF [C]

Identifier: 16126134

GI number: 16126134

Start: 2085750

End: 2086502

Strand: Direct

Name: yjcF [C]

Synonym: CC_1891

Alternate gene names: 16126134

Gene position: 2085750-2086502 (Clockwise)

Preceding gene: 16126133

Following gene: 16126137

Centisome position: 51.92

GC content: 67.6

Gene sequence:

>753_bases
ATGTGCGCCAATTGCGACCTGGCGGGCCGCAAGCTGATGAACGCCAAGTTCACCGGCGCCAACTTCGCCAAGGCCGTTCT
GATCGGCGCCGACCTGCGCGGCGCGATGTTTTATGGCTCGGATTTCGGATGGGCCGATCTGAGCCGCGCCGATCTGCGCG
GCGCCGAGATGCGCGGCGCCAACTTCACCCGCGCCAACTTCACCGACGCGCGTATGTCCGGCGTCGAGAGCAGCGGCGCC
AACTTCGCTCAGGCGACTCTGGTCCGCGTGGACCTGTCTTCGGCGGAGCTGCACGCCGCCAACATGGCCGGCGCCAACTT
GCAGAAGGCGCGCTTCGCCAACGCCGAGCTGATCGCCGCCAATCTGTCGGGCGCCAACGCCCGCGACGCCGACTTCTCGA
ACGCCGACATCAACCACGCCAACTTCCAGGGCGCGCGCTTCGACGGCGCGCGGTTCCACAACGCCGACATGACCGGCTCG
AATCTGCGCGGCGGGATCTTCAACAGCGCGGACTTCCGGAACGCCGACCTGACCATGGTCAATCTCAGCGGCGCTGATCT
ATCGAGCGCCCGGGGGCTGGAACAGGAACAGCTGGACGAGGCCTGTGGCGATAGCAGCACGCGACTGCCTTCGGGACTGA
GCGTCCGCACCTGTAATGGCCTGCGAAGCGGCCAGCACTTCATGCTCCTGCGCGCGGTGCCCAAGCCGCCCGCACCCCCC
GCCCCGCCGAAGGCCCCCAAAGGCCCCAAGTAA

Upstream 100 bases:

>100_bases
TTCCATCGCCGCCTTGACGCTGAGCCTCTTGGCCATGACGGGCCAGGCGCACGCTTGGGCCGAAGACAAGGACGTCGCCA
AGCTAACGTCCTTCGGCGGG

Downstream 100 bases:

>100_bases
GGTCGCTAGTAGGCCAAAGAAAAAAGCCCTCCGATCGCAAGACCGGAGGGCTTTTTCGTGGAGGGTCGGAACCCCGCCTA
CACCTTGATCGGCGGCGCGG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MCANCDLAGRKLMNAKFTGANFAKAVLIGADLRGAMFYGSDFGWADLSRADLRGAEMRGANFTRANFTDARMSGVESSGA
NFAQATLVRVDLSSAELHAANMAGANLQKARFANAELIAANLSGANARDADFSNADINHANFQGARFDGARFHNADMTGS
NLRGGIFNSADFRNADLTMVNLSGADLSSARGLEQEQLDEACGDSSTRLPSGLSVRTCNGLRSGQHFMLLRAVPKPPAPP
APPKAPKGPK

Sequences:

>Translated_250_residues
MCANCDLAGRKLMNAKFTGANFAKAVLIGADLRGAMFYGSDFGWADLSRADLRGAEMRGANFTRANFTDARMSGVESSGA
NFAQATLVRVDLSSAELHAANMAGANLQKARFANAELIAANLSGANARDADFSNADINHANFQGARFDGARFHNADMTGS
NLRGGIFNSADFRNADLTMVNLSGADLSSARGLEQEQLDEACGDSSTRLPSGLSVRTCNGLRSGQHFMLLRAVPKPPAPP
APPKAPKGPK
>Mature_250_residues
MCANCDLAGRKLMNAKFTGANFAKAVLIGADLRGAMFYGSDFGWADLSRADLRGAEMRGANFTRANFTDARMSGVESSGA
NFAQATLVRVDLSSAELHAANMAGANLQKARFANAELIAANLSGANARDADFSNADINHANFQGARFDGARFHNADMTGS
NLRGGIFNSADFRNADLTMVNLSGADLSSARGLEQEQLDEACGDSSTRLPSGLSVRTCNGLRSGQHFMLLRAVPKPPAPP
APPKAPKGPK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=152, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI221377802, Length=174, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 26302; Mature: 26302

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCANCDLAGRKLMNAKFTGANFAKAVLIGADLRGAMFYGSDFGWADLSRADLRGAEMRGA
CCCCCCCCCHHCCCEECCCCCCEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCCCCCC
NFTRANFTDARMSGVESSGANFAQATLVRVDLSSAELHAANMAGANLQKARFANAELIAA
CCEECCCCHHHHHCCCCCCCCCEEEEEEEEECCCCCEEHHHCCCCCCHHHHCCCCEEEEE
NLSGANARDADFSNADINHANFQGARFDGARFHNADMTGSNLRGGIFNSADFRNADLTMV
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
NLSGADLSSARGLEQEQLDEACGDSSTRLPSGLSVRTCNGLRSGQHFMLLRAVPKPPAPP
EECCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC
APPKAPKGPK
CCCCCCCCCC
>Mature Secondary Structure
MCANCDLAGRKLMNAKFTGANFAKAVLIGADLRGAMFYGSDFGWADLSRADLRGAEMRGA
CCCCCCCCCHHCCCEECCCCCCEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCCCCCC
NFTRANFTDARMSGVESSGANFAQATLVRVDLSSAELHAANMAGANLQKARFANAELIAA
CCEECCCCHHHHHCCCCCCCCCEEEEEEEEECCCCCEEHHHCCCCCCHHHHCCCCEEEEE
NLSGANARDADFSNADINHANFQGARFDGARFHNADMTGSNLRGGIFNSADFRNADLTMV
ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
NLSGADLSSARGLEQEQLDEACGDSSTRLPSGLSVRTCNGLRSGQHFMLLRAVPKPPAPP
EECCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC
APPKAPKGPK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA