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The map label for this gene is rsmB [H]

Identifier: 16125866

GI number: 16125866

Start: 1791838

End: 1793115

Strand: Direct

Name: rsmB [H]

Synonym: CC_1619

Alternate gene names: 16125866

Gene position: 1791838-1793115 (Clockwise)

Preceding gene: 16125865

Following gene: 16125867

Centisome position: 44.61

GC content: 70.74

Gene sequence:

>1278_bases
ATGCGAGACGGAGGACGGGTTTCAGCGGCGATCGAGGTTCTCACCGAGATCGAGGCGCGGCATTTTCCGGTGAAGATGGC
GCTGAAGCGCTGGGGCGAGACTGCGCGATACGCCGGGTCCAAGGACCGGGCGTTCGTCTCGGGGCTGGTCCTGGACGGCC
TGCGCCGCAAGCGCTCGCTCGGCTGGATGATGGCCGACAGCACGGCGCGCGGCGTCATGCTGGGCGTGCTGGCCTTTGTC
TGGAAGTGGCCGCTCGAGCGGATCGCCGAGGCCGCTGCGGAGGAGCACGGCTTTGGCGCCCTGACGGACGTCGAGCGCGA
GCGTCTGGCCGCTCCGGTGCCCATCGAAGGCGCGCCGGCGCCCGTCGCGGGCGACTATCCGGACTGGCTGGAGCCGCATC
TGGCGCGCGCCCTGGGCGCGGACCAGGCCGCCGAGATGCGGGCGCTCTCGGAGCGTGCGCCCGTCGATCTGCGGGTCAAT
ACGCTGAAGACCGATGTCGAGCGCTGCGCCAAGGCTCTGGCCTTGATCGACGCTGCGCCGGCGGGCGTCCTGGCGACCGC
CTTCCGCATTCCCGCGCCCGCCGCCGCCGATCGCACGCCGTCGGTGGAGGCCGTGCCCGCCTTCTCGAAGGGCTGGTTCG
AGGTGCAGGACCTGGGCTCCCAGATCGCCGCCGCCGTGGCGGGCGATGTGAAGGGCAAGCAGGTTCTCGACTTCTGCGCC
GGCGGGGGCGGCAAGACCCTGGCCCTGGCGGCCGCCATGGGCAACAGCGGCCAGATCTTCGCCCATGACAGCGATGCACG
CCGTCTGGCCGACACCATCCGTCGCGGCCAGCGGGCGGGGGTTCGCAACCTGCAGATCCGCTCGCCGATCGAGGCCACGC
CCCTGAAGGGCCTGGAAGGCAAGATCGACGTCGTCTTCGTCGACGCCCCCTGCACGGGCGCGGGCACCTGGCGTCGTCAC
CCGGACGCCAAGTGGCGTCTGTCGCCCGACCAACTGGCCAAGCGCCAGATCGAGCAGGACAGCGTGCTCGAAGACGCCGC
GGCCTTCGTGAAGGCCGGCGGCCGCATGATCTATGTGACCTGCTCGCTGCTGACCGAGGAGAACGAGGACCGCGTCGCGG
CCTTCCTCGAGCGCCACCCCGAATTCACCGTCAAGCCGATCGCCCTGGACGGCGTCACCCATGTGACCCCCGAAGGCTAT
CTGCGCCTGACCCCTCATCGCGCGGGCACTGACGGCTTCTTCGCCGCGGTGCTGCAACGCGCATCCTACACGCCCTGA

Upstream 100 bases:

>100_bases
ATCTGCCCCTCTATGCGTTCGGCGTGCCCTATGTCCGCAGCCTGGTCTGGCTGGCGTCGATGGTCGGGATCCTGATGCTG
CTCGCGGCCCTGGTGGTCTG

Downstream 100 bases:

>100_bases
CCGATCACGTCCGACCGCTGGAGACCTCGCCCATGACTCAGAAAACCGACCACCAGCGCGTCCTGATCGTCGACTTCGGC
AGCCAGGTCACCCAACTGAT

Product: sun family protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MRDGGRVSAAIEVLTEIEARHFPVKMALKRWGETARYAGSKDRAFVSGLVLDGLRRKRSLGWMMADSTARGVMLGVLAFV
WKWPLERIAEAAAEEHGFGALTDVERERLAAPVPIEGAPAPVAGDYPDWLEPHLARALGADQAAEMRALSERAPVDLRVN
TLKTDVERCAKALALIDAAPAGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVAGDVKGKQVLDFCA
GGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQIRSPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRH
PDAKWRLSPDQLAKRQIEQDSVLEDAAAFVKAGGRMIYVTCSLLTEENEDRVAAFLERHPEFTVKPIALDGVTHVTPEGY
LRLTPHRAGTDGFFAAVLQRASYTP

Sequences:

>Translated_425_residues
MRDGGRVSAAIEVLTEIEARHFPVKMALKRWGETARYAGSKDRAFVSGLVLDGLRRKRSLGWMMADSTARGVMLGVLAFV
WKWPLERIAEAAAEEHGFGALTDVERERLAAPVPIEGAPAPVAGDYPDWLEPHLARALGADQAAEMRALSERAPVDLRVN
TLKTDVERCAKALALIDAAPAGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVAGDVKGKQVLDFCA
GGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQIRSPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRH
PDAKWRLSPDQLAKRQIEQDSVLEDAAAFVKAGGRMIYVTCSLLTEENEDRVAAFLERHPEFTVKPIALDGVTHVTPEGY
LRLTPHRAGTDGFFAAVLQRASYTP
>Mature_425_residues
MRDGGRVSAAIEVLTEIEARHFPVKMALKRWGETARYAGSKDRAFVSGLVLDGLRRKRSLGWMMADSTARGVMLGVLAFV
WKWPLERIAEAAAEEHGFGALTDVERERLAAPVPIEGAPAPVAGDYPDWLEPHLARALGADQAAEMRALSERAPVDLRVN
TLKTDVERCAKALALIDAAPAGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVAGDVKGKQVLDFCA
GGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQIRSPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRH
PDAKWRLSPDQLAKRQIEQDSVLEDAAAFVKAGGRMIYVTCSLLTEENEDRVAAFLERHPEFTVKPIALDGVTHVTPEGY
LRLTPHRAGTDGFFAAVLQRASYTP

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=288, Percent_Identity=29.8611111111111, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI76150623, Length=288, Percent_Identity=29.8611111111111, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI23199998, Length=226, Percent_Identity=32.3008849557522, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI8922322, Length=226, Percent_Identity=32.3008849557522, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI270288818, Length=226, Percent_Identity=32.3008849557522, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI270288816, Length=226, Percent_Identity=32.3008849557522, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI32698918, Length=187, Percent_Identity=25.668449197861, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI2367212, Length=262, Percent_Identity=32.824427480916, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081985, Length=284, Percent_Identity=29.5774647887324, Blast_Score=95, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17536757, Length=291, Percent_Identity=30.5841924398625, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI115534021, Length=231, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71998419, Length=231, Percent_Identity=30.3030303030303, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324268, Length=314, Percent_Identity=26.1146496815287, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI22024126, Length=321, Percent_Identity=28.6604361370716, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45711; Mature: 45711

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDGGRVSAAIEVLTEIEARHFPVKMALKRWGETARYAGSKDRAFVSGLVLDGLRRKRSL
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHC
GWMMADSTARGVMLGVLAFVWKWPLERIAEAAAEEHGFGALTDVERERLAAPVPIEGAPA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCC
PVAGDYPDWLEPHLARALGADQAAEMRALSERAPVDLRVNTLKTDVERCAKALALIDAAP
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
AGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVAGDVKGKQVLDFCA
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
GGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQIRSPIEATPLKGLEG
CCCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
KIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLEDAAAFVKAGGRMIYVT
EEEEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
CSLLTEENEDRVAAFLERHPEFTVKPIALDGVTHVTPEGYLRLTPHRAGTDGFFAAVLQR
EEEECCCCHHHHHHHHHHCCCCEEEEEEECCCEECCCCCEEEECCCCCCCHHHHHHHHHH
ASYTP
HCCCC
>Mature Secondary Structure
MRDGGRVSAAIEVLTEIEARHFPVKMALKRWGETARYAGSKDRAFVSGLVLDGLRRKRSL
CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHC
GWMMADSTARGVMLGVLAFVWKWPLERIAEAAAEEHGFGALTDVERERLAAPVPIEGAPA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCC
PVAGDYPDWLEPHLARALGADQAAEMRALSERAPVDLRVNTLKTDVERCAKALALIDAAP
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
AGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVAGDVKGKQVLDFCA
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
GGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQIRSPIEATPLKGLEG
CCCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
KIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLEDAAAFVKAGGRMIYVT
EEEEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
CSLLTEENEDRVAAFLERHPEFTVKPIALDGVTHVTPEGYLRLTPHRAGTDGFFAAVLQR
EEEECCCCHHHHHHHHHHCCCCEEEEEEECCCEECCCCCEEEECCCCCCCHHHHHHHHHH
ASYTP
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]