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The map label for this gene is ycbB [H]

Identifier: 16125758

GI number: 16125758

Start: 1669327

End: 1670835

Strand: Direct

Name: ycbB [H]

Synonym: CC_1511

Alternate gene names: 16125758

Gene position: 1669327-1670835 (Clockwise)

Preceding gene: 16125757

Following gene: 16125759

Centisome position: 41.56

GC content: 68.72

Gene sequence:

>1509_bases
GTGATGCGATTTACGAGAACCTGCGGCGCCTTGGCGGCGACGTTGAGCCTCCTGTCCCTCGAGGTCGCCCAGGCGCAGTC
GCAGCGTCCGCCGGTGGTGGGCGCGCGTCCGGTGCAGAGCGGCCCGATCGTAGCGCCCCGGCCTGCCGTGATCCCGCCGG
ATCTGTCGGCGGTGCAGCTCAGCGTCGAACAGGTCGAGGTGCTGCGCGCCGTGCTGGGCGATGCCTATTCGCACGGCTTC
GCGATGACCGCCTTCTCGCCGGATCGGGCGATCGAGCTCTACATGGCCGGGGATCCGGCCTCGCGCGCCGCCGGACAGGC
GCAACTGGTCAGCCTCACCCTGGCCTATGCCCGCGCCGTGCGGACGGGACGGCTGCCGATCAGCGCCTTCAAGGCCGAAT
GGGGCTTGCGGCCGGCGGCCTATGATCCCACGCCCGAGTTTGTGGCGGCCGTGCAGCAGGGCCGTCTGGCCGAATGGCTG
GAGACCCTGCCGCCGCCTTACACGGGATACCAGGCCCTGCGGACGGGCCTGGCCACCTATCGCGACATCGCGGCCAAAGG
CGGCTGGCTGCCCATCGCCGCCGGTCCGGAGCTGAAGGAGGGGGTGACCGGCGCGCGCGTCGTGGCCCTTGAGGCCCGGC
TGGCGGCCGAGGACCCCACGGTGGCGGTGGACGCCGCACCGGTGTTCGACGCGGCCCTGACCCAGGCCGTGCAGCGGGCG
CAGAAGCGGTTTGGTCTCAATCCGAACGGGATCGTCGACAGGGCCACCCTGGCGGCGTTGAACATTCCCGTCGAGCGGCG
GATCGACCAGATCGTCGCCAATATGGAGCGCTGGCGCTGGCTGCCGCAGACCCTGCCGGCCGAGCGCATCCAGGTGAACG
TGGCGGCCGCCATCCTGTCGGTGTTCCATCACGACACCCCGACCCTGACGATGCGTGCGGTCACCGGCCGTCCGGGCGAT
GAGACGCCGATGCTGTCGTCGATGATCCACAGCATCGTGCTGAACCCGCCTTGGAACGTGCCGCAGTCGATCGCGTCGAA
GGAGATCTGGCCCAAGGAGCGGGCCAGTCCCGGCTATCTGGCGCGGAACGATTTCATCGTCATTCCGATCGAAGGCGGCG
GCACGCGTCTGCAGCAGAAGGCCGGCCCGCTGGCGGCGCTGGGGAAGGTGAAGTTCGACTTCAACAATCCCTACGGCGTC
TATCTGCACGACACCCCCAGCCGCTCGAGGTTCGACAGCTTCAGCCGCCTGGCCAGCCATGGCTGCGTGCGCCTGCAAAA
GCCGATCGAGCTGGTCAACGAGGTGATGCGCGACGATCCGACCTGGACGCCCGAGAAGGTCAACGAAACCCTGGCCTCGG
GCGAGACGGTGCGGGCCAAGCTGCCCCAGCAGATCGCCGTCTATCTGCTGTACTGGACGGCCTATGTGACGCCGGACGGG
CAGGTGAACTTCCGCCAGGATCCCTATGGCTGGGATCGTGATCTGGTGCAGCGTATCGCCGCACTCTGA

Upstream 100 bases:

>100_bases
CTCGCCTTTCACGCTACCCGCGTTGACGCGGAAGGCCCCGCACGGCCATCTGTAACCCTTAACGCGGCTTGGCCGCGCGA
GTGCGGCGGACCGTTCGACA

Downstream 100 bases:

>100_bases
TACGGCTCAGCTTGCATTCCGGCCCGTCATGAGGTGTCCTCCCGACCTTCCGTGTCGGGTAAGGCGTAATCATGCATCGA
CGTAAGCTGCTCCAGTGGGG

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MMRFTRTCGALAATLSLLSLEVAQAQSQRPPVVGARPVQSGPIVAPRPAVIPPDLSAVQLSVEQVEVLRAVLGDAYSHGF
AMTAFSPDRAIELYMAGDPASRAAGQAQLVSLTLAYARAVRTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWL
ETLPPPYTGYQALRTGLATYRDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAEDPTVAVDAAPVFDAALTQAVQRA
QKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLPAERIQVNVAAAILSVFHHDTPTLTMRAVTGRPGD
ETPMLSSMIHSIVLNPPWNVPQSIASKEIWPKERASPGYLARNDFIVIPIEGGGTRLQQKAGPLAALGKVKFDFNNPYGV
YLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDG
QVNFRQDPYGWDRDLVQRIAAL

Sequences:

>Translated_502_residues
MMRFTRTCGALAATLSLLSLEVAQAQSQRPPVVGARPVQSGPIVAPRPAVIPPDLSAVQLSVEQVEVLRAVLGDAYSHGF
AMTAFSPDRAIELYMAGDPASRAAGQAQLVSLTLAYARAVRTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWL
ETLPPPYTGYQALRTGLATYRDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAEDPTVAVDAAPVFDAALTQAVQRA
QKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLPAERIQVNVAAAILSVFHHDTPTLTMRAVTGRPGD
ETPMLSSMIHSIVLNPPWNVPQSIASKEIWPKERASPGYLARNDFIVIPIEGGGTRLQQKAGPLAALGKVKFDFNNPYGV
YLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDG
QVNFRQDPYGWDRDLVQRIAAL
>Mature_502_residues
MMRFTRTCGALAATLSLLSLEVAQAQSQRPPVVGARPVQSGPIVAPRPAVIPPDLSAVQLSVEQVEVLRAVLGDAYSHGF
AMTAFSPDRAIELYMAGDPASRAAGQAQLVSLTLAYARAVRTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWL
ETLPPPYTGYQALRTGLATYRDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAEDPTVAVDAAPVFDAALTQAVQRA
QKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLPAERIQVNVAAAILSVFHHDTPTLTMRAVTGRPGD
ETPMLSSMIHSIVLNPPWNVPQSIASKEIWPKERASPGYLARNDFIVIPIEGGGTRLQQKAGPLAALGKVKFDFNNPYGV
YLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDG
QVNFRQDPYGWDRDLVQRIAAL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=425, Percent_Identity=32, Blast_Score=177, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 54737; Mature: 54737

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRFTRTCGALAATLSLLSLEVAQAQSQRPPVVGARPVQSGPIVAPRPAVIPPDLSAVQL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
SVEQVEVLRAVLGDAYSHGFAMTAFSPDRAIELYMAGDPASRAAGQAQLVSLTLAYARAV
HHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHH
RTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWLETLPPPYTGYQALRTGLATY
HCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHH
RDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAEDPTVAVDAAPVFDAALTQAVQRA
HHHHHCCCEEEECCCCCHHHCCCCEEEEEEEHHHCCCCCCEEEECCHHHHHHHHHHHHHH
QKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLPAERIQVNVAAAILS
HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VFHHDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIASKEIWPKERASPGYL
HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCE
ARNDFIVIPIEGGGTRLQQKAGPLAALGKVKFDFNNPYGVYLHDTPSRSRFDSFSRLASH
ECCCEEEEEECCCCCHHHHHCCCEEEECEEEEECCCCEEEEEECCCCHHHHHHHHHHHHC
GCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDG
CCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHEECCCC
QVNFRQDPYGWDRDLVQRIAAL
CEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MMRFTRTCGALAATLSLLSLEVAQAQSQRPPVVGARPVQSGPIVAPRPAVIPPDLSAVQL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
SVEQVEVLRAVLGDAYSHGFAMTAFSPDRAIELYMAGDPASRAAGQAQLVSLTLAYARAV
HHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHH
RTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWLETLPPPYTGYQALRTGLATY
HCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHH
RDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAEDPTVAVDAAPVFDAALTQAVQRA
HHHHHCCCEEEECCCCCHHHCCCCEEEEEEEHHHCCCCCCEEEECCHHHHHHHHHHHHHH
QKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLPAERIQVNVAAAILS
HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
VFHHDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIASKEIWPKERASPGYL
HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCE
ARNDFIVIPIEGGGTRLQQKAGPLAALGKVKFDFNNPYGVYLHDTPSRSRFDSFSRLASH
ECCCEEEEEECCCCCHHHHHCCCEEEECEEEEECCCCEEEEEECCCCHHHHHHHHHHHHC
GCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDG
CCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHEECCCC
QVNFRQDPYGWDRDLVQRIAAL
CEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]