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The map label for this gene is lpsJ [H]

Identifier: 16124462

GI number: 16124462

Start: 221641

End: 222282

Strand: Direct

Name: lpsJ [H]

Synonym: CC_0207

Alternate gene names: 16124462

Gene position: 221641-222282 (Clockwise)

Preceding gene: 16124461

Following gene: 16124465

Centisome position: 5.52

GC content: 66.2

Gene sequence:

>642_bases
ATGGCCTGGACCCGCGACGAGGTGGCGGCCCGCGCCGCCAAGGAGCTGCAGGACGGCTTCTACGTGAACCTGGGCATCGG
CATCCCGACCCTGGTGGCCAACCACATCCCCGAGGGCATGCATGTGACGCTGCAGAGCGAGAACGGCATGCTGGGCATGG
GCCCCTTCCCCTATGAAGGCGAAGAGGACGCCGACCTGATCAACGCCGGCAAGCAGACGATCACCGAGCTGGACTCCAGT
TCGTATTTCTCGTCGGCCGACAGCTTCGCGATGATCCGGGGCGGCCATATCGCCCTGTCGATCCTGGGCGGCATGCAGGT
CTCGGAGAACGGCGACCTCGCCAACTGGATGGTGCCGGGCAAGATGGTCAAGGGCATGGGCGGGGCCATGGACCTGGTCG
CCGGCGTCAAGCGCGTCGTGGTCGTCATGGACCACTGCGAGAAGTCGGGCGCGCCGAAGCTCCTCAAGCAATGCTCGCTG
CCGCTGACCGGCGCCGGCGTCGTTGATCTCCTGATCACCGAACTGGGCGTCTTCGAGATCAATCGCGGCAAGACGCCGGT
GAAGCTGATCGAGCTGGCCCCGGGCGTCACCGTCGACGAGGTCAAGGCCAAGACCGAGGCGGCGTTCGAGGTGGCCGTCT
AG

Upstream 100 bases:

>100_bases
CCATCCACACCCCCGGCATCTATGTCGACCGCCTGATCAAGGGCGCGAAGTTCGAGAAGCGCATCGAGCGCGTGACCACT
CGCCAGAAGGAAACCGCGTA

Downstream 100 bases:

>100_bases
TCATTGCCCTAGCCAGTACGGGTGCTCCAGGGTGAGCGCCACATAGCGCGCCGTCGCCTTGCCATAGGCGGCGGCGATCG
CTTTGAGGGCGGTGGTCGGA

Product: 3-oxoadipate CoA-transferase subunit beta

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MAWTRDEVAARAAKELQDGFYVNLGIGIPTLVANHIPEGMHVTLQSENGMLGMGPFPYEGEEDADLINAGKQTITELDSS
SYFSSADSFAMIRGGHIALSILGGMQVSENGDLANWMVPGKMVKGMGGAMDLVAGVKRVVVVMDHCEKSGAPKLLKQCSL
PLTGAGVVDLLITELGVFEINRGKTPVKLIELAPGVTVDEVKAKTEAAFEVAV

Sequences:

>Translated_213_residues
MAWTRDEVAARAAKELQDGFYVNLGIGIPTLVANHIPEGMHVTLQSENGMLGMGPFPYEGEEDADLINAGKQTITELDSS
SYFSSADSFAMIRGGHIALSILGGMQVSENGDLANWMVPGKMVKGMGGAMDLVAGVKRVVVVMDHCEKSGAPKLLKQCSL
PLTGAGVVDLLITELGVFEINRGKTPVKLIELAPGVTVDEVKAKTEAAFEVAV
>Mature_212_residues
AWTRDEVAARAAKELQDGFYVNLGIGIPTLVANHIPEGMHVTLQSENGMLGMGPFPYEGEEDADLINAGKQTITELDSSS
YFSSADSFAMIRGGHIALSILGGMQVSENGDLANWMVPGKMVKGMGGAMDLVAGVKRVVVVMDHCEKSGAPKLLKQCSLP
LTGAGVVDLLITELGVFEINRGKTPVKLIELAPGVTVDEVKAKTEAAFEVAV

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI11545841, Length=209, Percent_Identity=59.3301435406699, Blast_Score=248, Evalue=2e-66,
Organism=Homo sapiens, GI4557817, Length=209, Percent_Identity=56.9377990430622, Blast_Score=239, Evalue=1e-63,
Organism=Escherichia coli, GI1788552, Length=208, Percent_Identity=54.3269230769231, Blast_Score=227, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI17531517, Length=210, Percent_Identity=55.7142857142857, Blast_Score=241, Evalue=1e-64,
Organism=Drosophila melanogaster, GI21358325, Length=209, Percent_Identity=57.4162679425837, Blast_Score=251, Evalue=2e-67,
Organism=Drosophila melanogaster, GI24655794, Length=209, Percent_Identity=57.4162679425837, Blast_Score=251, Evalue=3e-67,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22502; Mature: 22371

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTRDEVAARAAKELQDGFYVNLGIGIPTLVANHIPEGMHVTLQSENGMLGMGPFPYEG
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
EEDADLINAGKQTITELDSSSYFSSADSFAMIRGGHIALSILGGMQVSENGDLANWMVPG
CCCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCEEEEEEECCEEECCCCCEEEEECCH
KMVKGMGGAMDLVAGVKRVVVVMDHCEKSGAPKLLKQCSLPLTGAGVVDLLITELGVFEI
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCEEEE
NRGKTPVKLIELAPGVTVDEVKAKTEAAFEVAV
CCCCCCEEEEEECCCCCHHHHHHHHHHEEEECC
>Mature Secondary Structure 
AWTRDEVAARAAKELQDGFYVNLGIGIPTLVANHIPEGMHVTLQSENGMLGMGPFPYEG
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
EEDADLINAGKQTITELDSSSYFSSADSFAMIRGGHIALSILGGMQVSENGDLANWMVPG
CCCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCEEEEEEECCEEECCCCCEEEEECCH
KMVKGMGGAMDLVAGVKRVVVVMDHCEKSGAPKLLKQCSLPLTGAGVVDLLITELGVFEI
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCEEEE
NRGKTPVKLIELAPGVTVDEVKAKTEAAFEVAV
CCCCCCEEEEEECCCCCHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]