Click here to switch to the map view.

The map label for this gene is ychE [C]

Identifier: 16124361

GI number: 16124361

Start: 116088

End: 116786

Strand: Direct

Name: ychE [C]

Synonym: CC_0106

Alternate gene names: 16124361

Gene position: 116088-116786 (Clockwise)

Preceding gene: 16124359

Following gene: 16124362

Centisome position: 2.89

GC content: 67.24

Gene sequence:

>699_bases
ATGACCGAGGCCAATCTTGCCGTCAACTTCTTCGTCGCCCTGTTCGCCCTGATCGACCCGATCGGCAACGTGCCGCTGTT
CGCCGCCGCCACCCTGGGCGCGGCCGCCGCCGGACGTCGGATGGTGGCCGTCTATATCGGCCTGTTCATGGCCGCCTTCC
TGATCTTTTTCTACTTCACGGGCGTGGGCCTGCTGGAGTTCTTCGGCATCTCGATGCCGGCCTTCCGGATCGCCGGCGGC
ATCATCCTGTTCATCCTGGGCCTGGACATGGTGCGCGACGACTTCACCACCATGTTCGCCGACGCCGCCGAGGGGATCGA
GGACCAGTCGCCCCGCGCCTACGCCAAGCAGCGGTTCGAGCGGCTGATCGTGCCGTTCGCCATGCCGTTGCTGATCGGGC
CGGGCTCGATCTCGACCGTGATCATCTACGCCGCCGAGGCCAAGGACTTCGGCGCGGCGGGCATGGGCATCGGGGTCGCG
GTGATCGCGGCCGTGTCGCTGGTGACGGTGCTGACCTTCTGGGCCTCGCCGCTGGTCAGCAAGGTGCTGGGCCGCATCGG
CATGAGCATCGTGGTCCGCGTGCTGGGCCTGATCCTCTGCGCCCTGGCGGTGCAGTTCGTCCTGGTCGGTGTGGCCGACG
CCACGCGCGGCCTGATCAAGAACGACGCCAAGGCGCCCTACGCCGAGAGCCATAAGTAG

Upstream 100 bases:

>100_bases
CATGGGAGTCCCCGATGTTTTGGTCGCAAGGGTTGGCGCGCGCGACGGTCGGCCCTAGGAAAGGGCAAGCTCAGGCGCAT
CAGAAAGGTGGGGACGTCGA

Downstream 100 bases:

>100_bases
GGACCCGGCTCTGGACAGCGACCGGCGGCGAGGCCCATATCGCCGCCATGCGCGCCCCCAACGCCCCTTCGCACGACGCT
GATGTGATCATCGCCGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTEANLAVNFFVALFALIDPIGNVPLFAAATLGAAAAGRRMVAVYIGLFMAAFLIFFYFTGVGLLEFFGISMPAFRIAGG
IILFILGLDMVRDDFTTMFADAAEGIEDQSPRAYAKQRFERLIVPFAMPLLIGPGSISTVIIYAAEAKDFGAAGMGIGVA
VIAAVSLVTVLTFWASPLVSKVLGRIGMSIVVRVLGLILCALAVQFVLVGVADATRGLIKNDAKAPYAESHK

Sequences:

>Translated_232_residues
MTEANLAVNFFVALFALIDPIGNVPLFAAATLGAAAAGRRMVAVYIGLFMAAFLIFFYFTGVGLLEFFGISMPAFRIAGG
IILFILGLDMVRDDFTTMFADAAEGIEDQSPRAYAKQRFERLIVPFAMPLLIGPGSISTVIIYAAEAKDFGAAGMGIGVA
VIAAVSLVTVLTFWASPLVSKVLGRIGMSIVVRVLGLILCALAVQFVLVGVADATRGLIKNDAKAPYAESHK
>Mature_231_residues
TEANLAVNFFVALFALIDPIGNVPLFAAATLGAAAAGRRMVAVYIGLFMAAFLIFFYFTGVGLLEFFGISMPAFRIAGGI
ILFILGLDMVRDDFTTMFADAAEGIEDQSPRAYAKQRFERLIVPFAMPLLIGPGSISTVIIYAAEAKDFGAAGMGIGVAV
IAAVSLVTVLTFWASPLVSKVLGRIGMSIVVRVLGLILCALAVQFVLVGVADATRGLIKNDAKAPYAESHK

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=212, Percent_Identity=31.1320754716981, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789842, Length=206, Percent_Identity=27.6699029126214, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787809, Length=203, Percent_Identity=24.6305418719212, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 24506; Mature: 24374

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEANLAVNFFVALFALIDPIGNVPLFAAATLGAAAAGRRMVAVYIGLFMAAFLIFFYFT
CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVGLLEFFGISMPAFRIAGGIILFILGLDMVRDDFTTMFADAAEGIEDQSPRAYAKQRFE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RLIVPFAMPLLIGPGSISTVIIYAAEAKDFGAAGMGIGVAVIAAVSLVTVLTFWASPLVS
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVLGRIGMSIVVRVLGLILCALAVQFVLVGVADATRGLIKNDAKAPYAESHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TEANLAVNFFVALFALIDPIGNVPLFAAATLGAAAAGRRMVAVYIGLFMAAFLIFFYFT
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVGLLEFFGISMPAFRIAGGIILFILGLDMVRDDFTTMFADAAEGIEDQSPRAYAKQRFE
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
RLIVPFAMPLLIGPGSISTVIIYAAEAKDFGAAGMGIGVAVIAAVSLVTVLTFWASPLVS
HHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVLGRIGMSIVVRVLGLILCALAVQFVLVGVADATRGLIKNDAKAPYAESHK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]