Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16120330

GI number: 16120330

Start: 346299

End: 347408

Strand: Reverse

Name: Not Available

Synonym: VNG6460C

Alternate gene names: 16120330

Gene position: 347408-346299 (Counterclockwise)

Preceding gene: 16120332

Following gene: 16120329

Centisome position: 95.07

GC content: 65.59

Gene sequence:

>1110_bases
ATGCAGGAACTCTCGCCAGCGGAACTCGGCGAACAGGTACAGGATGATGATGGCCCACTCGTGCTGGATATTCGCCACGA
AGAAGACTTCCAGGAGTGGCACATTCCGGGCAGCCGTAACGTCGACGTCTACGACGAACTGACTGACGACCCGGAACAGG
CCATCGAACCACTCGACGACCTGCCCAGTGACGAACAAATCGTTACCGTCTGTGCCGCAGGCGTCGTCTCCCAGACTGCG
ACGGCCGTCCTCCGAGAGCTGGGGTACGACGCGGTGACGCTGACGGACGGGATGAACGGCTGGAGCCGCGTCCACCGGCA
CGCGGAACTCCCCGTAGACGTCGATGGGACCCTCGTGCAAGTCGCCCGTCCGGGGAAGGGCTGTCTCTCTCACGTGCTCG
TCTCCGACGGCGAGGCTGCCGTCTTCGACCCGTCACACTACCTCAACGAGTACGACACTGTCCTCGACGAGTATGATGCC
GAGCTTGTCGGCGTCTTCGACACGCACGCCCACGCCGACCACGTTTCAGGGGCGGCAGACCTCGCTGACCGCCACGACGT
TCCATACTATCTCCACCAGAAGGATGCGCTCGCTGTCGACGCGACACCGCTCGAGGACGGGCAGACTGTGACGGTCGGGC
GCCTCGACATCGAGGTCATCCACACGCCCGGCCACAGCGAGGGCAGCGTCTCCTTCGACGTCGAGGGGGCGGCGCTTCTG
ACTGGCGACACGCTGTTTCACGACAGCGTCGGCCGCGTCGAACTCGGCGTCGAGGCCGGCATCGAGGACGCCGACGTCGA
GGGGAACGCCGCGACGCTGTACGAGAGCCTCCAGCGGTTGCTGGACCGCCCTGATGACGCGCTGGTCCTGCCGGCGCACG
ATCCGGGCTCGCCCGAACCGCCGGTGGCCGCCACGCTTGCGGAGGTCAGAGAACGGAACGACGACCTCGGTCGCGACCGG
GAGGCGTTCGTCGAGGAGCTTGCGTCGGACATCCCGGACCATCCGCCGAACTTCGAACGCGTCAAGCGGACGAACGTCGG
GCAGGAGTCGGTCCCCGAGGAGGAACTAGCCGAACTGGAACTAGGCCCAAACAACTGTGCGGCCGAGTAA

Upstream 100 bases:

>100_bases
TACAGTCCCATACGCGTAGGTTCGAACTCGACGTAATTAGCGGTGCCGGTCATGGCCGGCAGTACCCATATGCTAATATC
TCTGCTAATCCGGACTACCG

Downstream 100 bases:

>100_bases
TCCATGAGTACGACCACTGAACTCCGCCAAGGGATCCGCGAACACCTCGGGCAGTTCTCGCTGCACGTCCTGCTCGTCTT
CGCGACCGGCCTGACCATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MQELSPAELGEQVQDDDGPLVLDIRHEEDFQEWHIPGSRNVDVYDELTDDPEQAIEPLDDLPSDEQIVTVCAAGVVSQTA
TAVLRELGYDAVTLTDGMNGWSRVHRHAELPVDVDGTLVQVARPGKGCLSHVLVSDGEAAVFDPSHYLNEYDTVLDEYDA
ELVGVFDTHAHADHVSGAADLADRHDVPYYLHQKDALAVDATPLEDGQTVTVGRLDIEVIHTPGHSEGSVSFDVEGAALL
TGDTLFHDSVGRVELGVEAGIEDADVEGNAATLYESLQRLLDRPDDALVLPAHDPGSPEPPVAATLAEVRERNDDLGRDR
EAFVEELASDIPDHPPNFERVKRTNVGQESVPEEELAELELGPNNCAAE

Sequences:

>Translated_369_residues
MQELSPAELGEQVQDDDGPLVLDIRHEEDFQEWHIPGSRNVDVYDELTDDPEQAIEPLDDLPSDEQIVTVCAAGVVSQTA
TAVLRELGYDAVTLTDGMNGWSRVHRHAELPVDVDGTLVQVARPGKGCLSHVLVSDGEAAVFDPSHYLNEYDTVLDEYDA
ELVGVFDTHAHADHVSGAADLADRHDVPYYLHQKDALAVDATPLEDGQTVTVGRLDIEVIHTPGHSEGSVSFDVEGAALL
TGDTLFHDSVGRVELGVEAGIEDADVEGNAATLYESLQRLLDRPDDALVLPAHDPGSPEPPVAATLAEVRERNDDLGRDR
EAFVEELASDIPDHPPNFERVKRTNVGQESVPEEELAELELGPNNCAAE
>Mature_369_residues
MQELSPAELGEQVQDDDGPLVLDIRHEEDFQEWHIPGSRNVDVYDELTDDPEQAIEPLDDLPSDEQIVTVCAAGVVSQTA
TAVLRELGYDAVTLTDGMNGWSRVHRHAELPVDVDGTLVQVARPGKGCLSHVLVSDGEAAVFDPSHYLNEYDTVLDEYDA
ELVGVFDTHAHADHVSGAADLADRHDVPYYLHQKDALAVDATPLEDGQTVTVGRLDIEVIHTPGHSEGSVSFDVEGAALL
TGDTLFHDSVGRVELGVEAGIEDADVEGNAATLYESLQRLLDRPDDALVLPAHDPGSPEPPVAATLAEVRERNDDLGRDR
EAFVEELASDIPDHPPNFERVKRTNVGQESVPEEELAELELGPNNCAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Homo sapiens, GI21703352, Length=140, Percent_Identity=35, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI116642887, Length=140, Percent_Identity=35, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI41327741, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI1787158, Length=181, Percent_Identity=28.7292817679558, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17538952, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 40000; Mature: 40000

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQELSPAELGEQVQDDDGPLVLDIRHEEDFQEWHIPGSRNVDVYDELTDDPEQAIEPLDD
CCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHC
LPSDEQIVTVCAAGVVSQTATAVLRELGYDAVTLTDGMNGWSRVHRHAELPVDVDGTLVQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCCEEE
VARPGKGCLSHVLVSDGEAAVFDPSHYLNEYDTVLDEYDAELVGVFDTHAHADHVSGAAD
EECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCCHHH
LADRHDVPYYLHQKDALAVDATPLEDGQTVTVGRLDIEVIHTPGHSEGSVSFDVEGAALL
HHHCCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEECCEEEE
TGDTLFHDSVGRVELGVEAGIEDADVEGNAATLYESLQRLLDRPDDALVLPAHDPGSPEP
ECCCHHHCCCCCEEECHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
PVAATLAEVRERNDDLGRDREAFVEELASDIPDHPPNFERVKRTNVGQESVPEEELAELE
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHCC
LGPNNCAAE
CCCCCCCCC
>Mature Secondary Structure
MQELSPAELGEQVQDDDGPLVLDIRHEEDFQEWHIPGSRNVDVYDELTDDPEQAIEPLDD
CCCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHC
LPSDEQIVTVCAAGVVSQTATAVLRELGYDAVTLTDGMNGWSRVHRHAELPVDVDGTLVQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCCCCCEEE
VARPGKGCLSHVLVSDGEAAVFDPSHYLNEYDTVLDEYDAELVGVFDTHAHADHVSGAAD
EECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCCHHH
LADRHDVPYYLHQKDALAVDATPLEDGQTVTVGRLDIEVIHTPGHSEGSVSFDVEGAALL
HHHCCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEECCEEEE
TGDTLFHDSVGRVELGVEAGIEDADVEGNAATLYESLQRLLDRPDDALVLPAHDPGSPEP
ECCCHHHCCCCCEEECHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
PVAATLAEVRERNDDLGRDREAFVEELASDIPDHPPNFERVKRTNVGQESVPEEELAELE
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHCC
LGPNNCAAE
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]