| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120320
GI number: 16120320
Start: 339116
End: 339496
Strand: Reverse
Name: Not Available
Synonym: VNG6448H
Alternate gene names: NA
Gene position: 339496-339116 (Counterclockwise)
Preceding gene: 16120323
Following gene: 16120319
Centisome position: 92.9
GC content: 50.92
Gene sequence:
>381_bases ATGGTCTCTGGCTGGCAGGTAATCCGAGTGGCGTGCATCTTATCTGTGTCTGTCGGCGTGGGCTTACTCGCTATTTCGAT TTCTCTCGGCCTAACAGCGGGTACAGCACCGCCAGTACTAGTCGGATTCGGTGGGTCAGTCTGTACGGCGTATCTCTTGC TCCGGAAGCACCCTAATATCGAGACTGGGCCTCTGTGGCGGTTCAGTGGTCTTGTTTTTGTACTGTTCATTCTTGGGAAT GCCGTTTCCACAGAGGGTATCTATGCCCCTCAAAGTGAGCAATCGCCGCTCGCAATTGGTGGTGTATGGGCTCTTTCACT ACTGATTTGCTACACGGTGATATTTAAAGTGGAATGGACGAATCGTTCTCCTTCTCAATAA
Upstream 100 bases:
>100_bases AGTTAAGGAGAACCCATCTCGATGTGGTGCGACATTTCGCTAAGTACAGAGGGTTTAATGAATGGCGTAGGCTTTTCTTG GCCGAAGGGATAAGTCTGGT
Downstream 100 bases:
>100_bases CCGTCTGGTAGATTTGTACACCTACTGAGCGGCTGTTTCATTCAGGATTCGCTGGTAAGAATTCGCCTCAATGTGATGCG TAACTTCGCTAAGTACAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MVSGWQVIRVACILSVSVGVGLLAISISLGLTAGTAPPVLVGFGGSVCTAYLLLRKHPNIETGPLWRFSGLVFVLFILGN AVSTEGIYAPQSEQSPLAIGGVWALSLLICYTVIFKVEWTNRSPSQ
Sequences:
>Translated_126_residues MVSGWQVIRVACILSVSVGVGLLAISISLGLTAGTAPPVLVGFGGSVCTAYLLLRKHPNIETGPLWRFSGLVFVLFILGN AVSTEGIYAPQSEQSPLAIGGVWALSLLICYTVIFKVEWTNRSPSQ >Mature_126_residues MVSGWQVIRVACILSVSVGVGLLAISISLGLTAGTAPPVLVGFGGSVCTAYLLLRKHPNIETGPLWRFSGLVFVLFILGN AVSTEGIYAPQSEQSPLAIGGVWALSLLICYTVIFKVEWTNRSPSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13319; Mature: 13319
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSGWQVIRVACILSVSVGVGLLAISISLGLTAGTAPPVLVGFGGSVCTAYLLLRKHPNI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCC ETGPLWRFSGLVFVLFILGNAVSTEGIYAPQSEQSPLAIGGVWALSLLICYTVIFKVEWT CCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHEEEEC NRSPSQ CCCCCC >Mature Secondary Structure MVSGWQVIRVACILSVSVGVGLLAISISLGLTAGTAPPVLVGFGGSVCTAYLLLRKHPNI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCC ETGPLWRFSGLVFVLFILGNAVSTEGIYAPQSEQSPLAIGGVWALSLLICYTVIFKVEWT CCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHEEEEC NRSPSQ CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA