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The map label for this gene is crt_2

Identifier: 16120317

GI number: 16120317

Start: 336128

End: 337210

Strand: Direct

Name: crt_2

Synonym: VNG6445G

Alternate gene names: 16120317

Gene position: 336128-337210 (Clockwise)

Preceding gene: 16120313

Following gene: 16120321

Centisome position: 91.98

GC content: 62.05

Gene sequence:

>1083_bases
ATGACGGCGCAGGACTCCACGCAGACTGAAGACCGAAAAGACGACCACCTTCAAATCGTCCAAGAGCGGGACGTCGAAAC
GACAGGCACGGGCTTCGACGACGTCCACCTCGTCCACAACGCGCTTCCGGAACTCGATTACGACGCGATCGACCCCTCCA
TCGACTTCCTGGGTCACGACCTCTCTGCCCCAATCTTCATCGAGAGCATGACTGGCGGGCACCACAACACGACGGAGATC
AATCGGGCGCTGGCCCGGGCCGCCAGCGAAACCGGTATCGCCATGGGTCTCGGTAGCCAGCGAGCAGGCCTCGAACTCGA
CGACGAACGCGTCCTCGAATCGTACACCGTCGTCCGCGATGCCGCACCCGATGCGTTCATCTACGGGAACCTCGGCGCTG
CACAGCTCCGAGAGTACGACATCGAAATGGTCGAGCAGGCAGTCGAGATGATCGACGCCGACGCGCTCGCGGTCCACCTG
AACTTCCTCCAGGAAGCCACCCAACCAGAAGGCGACGTCGATGGCCGGAACTGTGTAGCTGCGATCGAACGAGTGTCCGA
GGCACTCTCGGTGCCGATTATCGTCAAGGAAACGGGCAACGGCATCTCCGGGGAGACTGCCCGAGAGCTAACTGCGGCAG
GCGTTGACGCTCTCGACGTCGCTGGCAAAGGCGGAACGACGTGGTCCGGGATCGAAGCCTATCGCGCAGCAGCCGCGAAC
GCGCCGCGACAGAAACAAATCGGCACCCTGTTCCGAGAATGGGGCATTCCAACCGCTGCAAGCACGATCGAGTGTGTTGC
CGAACACGACTGCGTCATTGCGAGTGGTGGTGTCCGAACGGGATTGGACGTGGCAAAAGCGATTGCCCTGGGTGCCCGCG
CCGGCGGGTTGGCGAAACCATTCCTGAAACCAGCTACAGACGGGCCAGACGCTGTCATCGAACGCGTCGGGGACCTGATC
GCCGAGCTGCGAACAGCGATGTTCGTCACCGGCTCGGGGTCGATCGACGAGCTCCAGCAGGTGGAGTACGTGTTGCACGG
AAAGACGCGCGAGTACGTGGAACAACGAACCAGTAGCGAGTAG

Upstream 100 bases:

>100_bases
CACATAGCGACCCCTGAATATTATCATTTCAAGAATAGTTAGGATGGGGGAGAGTCGATACAACAGTATTGTTTTCCCAT
CTCTTGTACAAACCCGACTA

Downstream 100 bases:

>100_bases
TCCCGGATTCCCCAGTCTCAGCAGGACGGATAGAACAACAGCGGGAAAGAGAGAGCCGACTCCGATATCTGTCCAACCTG
TACTTACCGAACTACGCACC

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTAQDSTQTEDRKDDHLQIVQERDVETTGTGFDDVHLVHNALPELDYDAIDPSIDFLGHDLSAPIFIESMTGGHHNTTEI
NRALARAASETGIAMGLGSQRAGLELDDERVLESYTVVRDAAPDAFIYGNLGAAQLREYDIEMVEQAVEMIDADALAVHL
NFLQEATQPEGDVDGRNCVAAIERVSEALSVPIIVKETGNGISGETARELTAAGVDALDVAGKGGTTWSGIEAYRAAAAN
APRQKQIGTLFREWGIPTAASTIECVAEHDCVIASGGVRTGLDVAKAIALGARAGGLAKPFLKPATDGPDAVIERVGDLI
AELRTAMFVTGSGSIDELQQVEYVLHGKTREYVEQRTSSE

Sequences:

>Translated_360_residues
MTAQDSTQTEDRKDDHLQIVQERDVETTGTGFDDVHLVHNALPELDYDAIDPSIDFLGHDLSAPIFIESMTGGHHNTTEI
NRALARAASETGIAMGLGSQRAGLELDDERVLESYTVVRDAAPDAFIYGNLGAAQLREYDIEMVEQAVEMIDADALAVHL
NFLQEATQPEGDVDGRNCVAAIERVSEALSVPIIVKETGNGISGETARELTAAGVDALDVAGKGGTTWSGIEAYRAAAAN
APRQKQIGTLFREWGIPTAASTIECVAEHDCVIASGGVRTGLDVAKAIALGARAGGLAKPFLKPATDGPDAVIERVGDLI
AELRTAMFVTGSGSIDELQQVEYVLHGKTREYVEQRTSSE
>Mature_359_residues
TAQDSTQTEDRKDDHLQIVQERDVETTGTGFDDVHLVHNALPELDYDAIDPSIDFLGHDLSAPIFIESMTGGHHNTTEIN
RALARAASETGIAMGLGSQRAGLELDDERVLESYTVVRDAAPDAFIYGNLGAAQLREYDIEMVEQAVEMIDADALAVHLN
FLQEATQPEGDVDGRNCVAAIERVSEALSVPIIVKETGNGISGETARELTAAGVDALDVAGKGGTTWSGIEAYRAAAANA
PRQKQIGTLFREWGIPTAASTIECVAEHDCVIASGGVRTGLDVAKAIALGARAGGLAKPFLKPATDGPDAVIERVGDLIA
ELRTAMFVTGSGSIDELQQVEYVLHGKTREYVEQRTSSE

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_HALSA (Q9HHE4)

Other databases:

- EMBL:   AF016485
- EMBL:   AF016485
- EMBL:   AE004438
- EMBL:   AE004438
- RefSeq:   NP_046005.1
- RefSeq:   NP_046094.1
- RefSeq:   NP_395633.1
- RefSeq:   NP_395905.1
- ProteinModelPortal:   Q9HHE4
- SMR:   Q9HHE4
- GeneID:   1446842
- GeneID:   1446923
- GeneID:   1449237
- GeneID:   1449415
- GenomeReviews:   AE004438_GR
- GenomeReviews:   AE004438_GR
- GenomeReviews:   AF016485_GR
- GenomeReviews:   AF016485_GR
- KEGG:   hal:VNG6081G
- KEGG:   hal:VNG6445G
- HOGENOM:   HBG354479
- ProtClustDB:   PRK05437
- BioCyc:   HSP64091:H0660-MONOMER
- BioCyc:   HSP64091:H1696-MONOMER
- BioCyc:   HSP64091:VNG6081G-MONOMER
- BioCyc:   HSP64091:VNG6445G-MONOMER
- BRENDA:   5.3.3.2
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38343; Mature: 38212

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQDSTQTEDRKDDHLQIVQERDVETTGTGFDDVHLVHNALPELDYDAIDPSIDFLGHD
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCHHHHCCC
LSAPIFIESMTGGHHNTTEINRALARAASETGIAMGLGSQRAGLELDDERVLESYTVVRD
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHH
AAPDAFIYGNLGAAQLREYDIEMVEQAVEMIDADALAVHLNFLQEATQPEGDVDGRNCVA
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AIERVSEALSVPIIVKETGNGISGETARELTAAGVDALDVAGKGGTTWSGIEAYRAAAAN
HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHCC
APRQKQIGTLFREWGIPTAASTIECVAEHDCVIASGGVRTGLDVAKAIALGARAGGLAKP
CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
FLKPATDGPDAVIERVGDLIAELRTAMFVTGSGSIDELQQVEYVLHGKTREYVEQRTSSE
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TAQDSTQTEDRKDDHLQIVQERDVETTGTGFDDVHLVHNALPELDYDAIDPSIDFLGHD
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCHHHHCCC
LSAPIFIESMTGGHHNTTEINRALARAASETGIAMGLGSQRAGLELDDERVLESYTVVRD
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHH
AAPDAFIYGNLGAAQLREYDIEMVEQAVEMIDADALAVHLNFLQEATQPEGDVDGRNCVA
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
AIERVSEALSVPIIVKETGNGISGETARELTAAGVDALDVAGKGGTTWSGIEAYRAAAAN
HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHCC
APRQKQIGTLFREWGIPTAASTIECVAEHDCVIASGGVRTGLDVAKAIALGARAGGLAKP
CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
FLKPATDGPDAVIERVGDLIAELRTAMFVTGSGSIDELQQVEYVLHGKTREYVEQRTSSE
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9847077; 11016950