Definition Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence.
Accession NC_002608
Length 365,425

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 16120104

GI number: 16120104

Start: 132832

End: 133239

Strand: Direct

Name: Not Available

Synonym: VNG6156H

Alternate gene names: NA

Gene position: 132832-133239 (Clockwise)

Preceding gene: 16120103

Following gene: 16120109

Centisome position: 36.35

GC content: 56.13

Gene sequence:

>408_bases
ATGCTTCCTGATGGCCTCTCTGTCGATCAAGACAAGTTACTGACGTGGCAGACCGAGTGCTGGCAGTGCGGTGAGGAGAC
GCCAATAGTCTGGCCCCGCGACGACCATCTCAACACCCCTATTGGTGGCGTGCTTGCAAAGTACGATACTCCTGTCAAAC
GTGTCTACAGCAACACGCTTGAAAAAGAGGTGTGGGGAAACGTCTGCCAGCACTGCGAGGCATACCAAGGAAATCACTAC
ATGGAACAAGAAGCGGTTGAGATCGACCCGCCGTACGTGGAGTGCCCGAATTGTGGCGAGGAGCATAAGTGGCGGCCAGA
CGAGGGACTTGGCGCTGCTTTTAGTCAGGGCTGGGTCTCCTGTCCGGAGTACGGCGAAGTGCCTGTTGGCGATCCACGCA
AAAAGTGA

Upstream 100 bases:

>100_bases
AGACGAAAACGAATGAACGACAATAGCGACGTAGACCCTGAGAACCCTCGGTCGAAGGGGCCAAGCAATCAAATATGCCG
GTGGCGAACAGCGAGGCGAC

Downstream 100 bases:

>100_bases
TCGAGAGATGTCCGACGTAGTTTTTTATGCGCGGGGTGGCAAAGGCTACGCAACCAAGGTAGGCTAACCGCACGACGTGC
CTAGTCGTCGGGGATGCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MLPDGLSVDQDKLLTWQTECWQCGEETPIVWPRDDHLNTPIGGVLAKYDTPVKRVYSNTLEKEVWGNVCQHCEAYQGNHY
MEQEAVEIDPPYVECPNCGEEHKWRPDEGLGAAFSQGWVSCPEYGEVPVGDPRKK

Sequences:

>Translated_135_residues
MLPDGLSVDQDKLLTWQTECWQCGEETPIVWPRDDHLNTPIGGVLAKYDTPVKRVYSNTLEKEVWGNVCQHCEAYQGNHY
MEQEAVEIDPPYVECPNCGEEHKWRPDEGLGAAFSQGWVSCPEYGEVPVGDPRKK
>Mature_135_residues
MLPDGLSVDQDKLLTWQTECWQCGEETPIVWPRDDHLNTPIGGVLAKYDTPVKRVYSNTLEKEVWGNVCQHCEAYQGNHY
MEQEAVEIDPPYVECPNCGEEHKWRPDEGLGAAFSQGWVSCPEYGEVPVGDPRKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15351; Mature: 15351

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDGLSVDQDKLLTWQTECWQCGEETPIVWPRDDHLNTPIGGVLAKYDTPVKRVYSNTL
CCCCCCCCCCCCEEEECHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
EKEVWGNVCQHCEAYQGNHYMEQEAVEIDPPYVECPNCGEEHKWRPDEGLGAAFSQGWVS
HHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
CPEYGEVPVGDPRKK
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPDGLSVDQDKLLTWQTECWQCGEETPIVWPRDDHLNTPIGGVLAKYDTPVKRVYSNTL
CCCCCCCCCCCCEEEECHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
EKEVWGNVCQHCEAYQGNHYMEQEAVEIDPPYVECPNCGEEHKWRPDEGLGAAFSQGWVS
HHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
CPEYGEVPVGDPRKK
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA