| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120095
GI number: 16120095
Start: 120237
End: 121358
Strand: Reverse
Name: Not Available
Synonym: VNG6145H
Alternate gene names: NA
Gene position: 121358-120237 (Counterclockwise)
Preceding gene: 16120096
Following gene: 16120094
Centisome position: 33.21
GC content: 62.83
Gene sequence:
>1122_bases ATGTCCATCGACCAAGACGCAGCCGCACGGCGCATCATGGACCAGTTCGGTGAGGAGAGTCGCATCCCTTCCCTCAACAT CGAGGAAGGCGACGTTGGCGTCCTCATCGCCTTCCCGATCGTCGGCCTGTTTGTCGCGGGCCTCACCGGCATCGAATCAC TTGCTCTCCCGTTCGTCGCAGGGGGGTTCGGGTTCGGCGTTGCAATCGTCTACGTCTCGCCCGACCACCTCAACGCGTGG ACGTGGACGAAAGACGTCTATCGCTACGTCAAGCGCCCCCAGATCACGTTCAGTTCCCCAGAGGAGGCCAACAGTAGTAC CAACGAGACAGAGCGCAACGAGGGCGGGCTCGCGAACTACACGCCGTTCAAGCCCGACGAACGAACGCAGGACCTCACGA ACATCGAACGGGCGTGGCCGGGGGCTGGTGCGATCCAGCGCGCCGACGGCACGATGGAGGCGTTCATCGAGATCGACCCG GACAACATGGACTTCGCGATGTCCGACGACTGGGCCCAGCTCCAGGACGCCGGCGAGGAGTTCGCCAACAAGGAACTCGA CTCCGAGCTCAAACTCCACGCGACAACCCGCTCATTTCCGGTGGAGCAGATCACCGAGACCATCGAGGAGCGCCTCACTG ACGAAGACGTCACGGAGAACCCGATCTTCCGGGAACTCCTCGAGGAGTACCGGGAGACACGGCCGAAGGAGATGCGTGAC CGGGGCATCCAGCAAGTCCGGTACTACATCGGCGTCCAAGTCAGCCCGATAGAGGTCTACGACCGCTTCCGCGACGAGGG CACGCCGGCCGAGAAGCTGACCCAGTTCCCCGTCATCGGATTCCTCTTCAATCCGTTCGTGACCCGCCGAGAGGACCTTA CCGACGTCGAGCGCCGTGCCCAGATGTTCGAGAAGCTGGACAGCCGAGTCAACGACGTGCGGTCGGAGTTCATCCAGCAG GCCTCGGGGTGGTCCGCCCGCCGGCTCGGCACGGTCGAACTCTTCGTGTTGAATATGGACTTCTGGAACGGCCGCGAACA CGACTACGACGAAGCCGAGCGCGTCGTTCGCGAACAACCGATCATCGGCCATTCACGCCGGGAGGATGCCCACGATGCGT AA
Upstream 100 bases:
>100_bases GGCGCAGAAAGCTGCATCTCGGGGCTCGAATAGCGACGAAGACAGCGGGACGCCGTCCTACCGGCGGACCGAGAACGACC CTGGAAGCTACTAACAATCC
Downstream 100 bases:
>100_bases CCTCGTCCTCCAGACGGGCAGCGGAGCCGTCGCCCAGCTCACGGAGTGGCTCACGAATCCGACGTCAGTCGAGGGTACAG CCCTCTACATTCTGCTCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSIDQDAAARRIMDQFGEESRIPSLNIEEGDVGVLIAFPIVGLFVAGLTGIESLALPFVAGGFGFGVAIVYVSPDHLNAW TWTKDVYRYVKRPQITFSSPEEANSSTNETERNEGGLANYTPFKPDERTQDLTNIERAWPGAGAIQRADGTMEAFIEIDP DNMDFAMSDDWAQLQDAGEEFANKELDSELKLHATTRSFPVEQITETIEERLTDEDVTENPIFRELLEEYRETRPKEMRD RGIQQVRYYIGVQVSPIEVYDRFRDEGTPAEKLTQFPVIGFLFNPFVTRREDLTDVERRAQMFEKLDSRVNDVRSEFIQQ ASGWSARRLGTVELFVLNMDFWNGREHDYDEAERVVREQPIIGHSRREDAHDA
Sequences:
>Translated_373_residues MSIDQDAAARRIMDQFGEESRIPSLNIEEGDVGVLIAFPIVGLFVAGLTGIESLALPFVAGGFGFGVAIVYVSPDHLNAW TWTKDVYRYVKRPQITFSSPEEANSSTNETERNEGGLANYTPFKPDERTQDLTNIERAWPGAGAIQRADGTMEAFIEIDP DNMDFAMSDDWAQLQDAGEEFANKELDSELKLHATTRSFPVEQITETIEERLTDEDVTENPIFRELLEEYRETRPKEMRD RGIQQVRYYIGVQVSPIEVYDRFRDEGTPAEKLTQFPVIGFLFNPFVTRREDLTDVERRAQMFEKLDSRVNDVRSEFIQQ ASGWSARRLGTVELFVLNMDFWNGREHDYDEAERVVREQPIIGHSRREDAHDA >Mature_372_residues SIDQDAAARRIMDQFGEESRIPSLNIEEGDVGVLIAFPIVGLFVAGLTGIESLALPFVAGGFGFGVAIVYVSPDHLNAWT WTKDVYRYVKRPQITFSSPEEANSSTNETERNEGGLANYTPFKPDERTQDLTNIERAWPGAGAIQRADGTMEAFIEIDPD NMDFAMSDDWAQLQDAGEEFANKELDSELKLHATTRSFPVEQITETIEERLTDEDVTENPIFRELLEEYRETRPKEMRDR GIQQVRYYIGVQVSPIEVYDRFRDEGTPAEKLTQFPVIGFLFNPFVTRREDLTDVERRAQMFEKLDSRVNDVRSEFIQQA SGWSARRLGTVELFVLNMDFWNGREHDYDEAERVVREQPIIGHSRREDAHDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42707; Mature: 42576
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDQDAAARRIMDQFGEESRIPSLNIEEGDVGVLIAFPIVGLFVAGLTGIESLALPFVA CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH GGFGFGVAIVYVSPDHLNAWTWTKDVYRYVKRPQITFSSPEEANSSTNETERNEGGLANY CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCCHHCCCCCCCCCCCCCCCCCC TPFKPDERTQDLTNIERAWPGAGAIQRADGTMEAFIEIDPDNMDFAMSDDWAQLQDAGEE CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH FANKELDSELKLHATTRSFPVEQITETIEERLTDEDVTENPIFRELLEEYRETRPKEMRD HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH RGIQQVRYYIGVQVSPIEVYDRFRDEGTPAEKLTQFPVIGFLFNPFVTRREDLTDVERRA HHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHH QMFEKLDSRVNDVRSEFIQQASGWSARRLGTVELFVLNMDFWNGREHDYDEAERVVREQP HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCC IIGHSRREDAHDA CCCCCCCCCCCCC >Mature Secondary Structure SIDQDAAARRIMDQFGEESRIPSLNIEEGDVGVLIAFPIVGLFVAGLTGIESLALPFVA CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH GGFGFGVAIVYVSPDHLNAWTWTKDVYRYVKRPQITFSSPEEANSSTNETERNEGGLANY CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCCHHCCCCCCCCCCCCCCCCCC TPFKPDERTQDLTNIERAWPGAGAIQRADGTMEAFIEIDPDNMDFAMSDDWAQLQDAGEE CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH FANKELDSELKLHATTRSFPVEQITETIEERLTDEDVTENPIFRELLEEYRETRPKEMRD HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHH RGIQQVRYYIGVQVSPIEVYDRFRDEGTPAEKLTQFPVIGFLFNPFVTRREDLTDVERRA HHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHH QMFEKLDSRVNDVRSEFIQQASGWSARRLGTVELFVLNMDFWNGREHDYDEAERVVREQP HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCC IIGHSRREDAHDA CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA