| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120080
GI number: 16120080
Start: 93610
End: 94074
Strand: Direct
Name: Not Available
Synonym: VNG6128H
Alternate gene names: NA
Gene position: 93610-94074 (Clockwise)
Preceding gene: 16120079
Following gene: 16120083
Centisome position: 25.62
GC content: 57.42
Gene sequence:
>465_bases ATGACCACCTACCAGTTCCGAGTCAAATTCGAATACGCTCCGACTGAACTGTGGCGTGACATCATCGTCGGGGCCGACCG CACCCTCGACGAGTTCCAAACGGTACTGAATCGCGCGGTCGGTCTCGACCAAGACCACCTCTGGTTTGTCGGCACTGACC AAGACTACTGGGACAGCGACGTGCAGTACAAGTGCCCCAGTGAATTCGAGCAATCATCGGATGGGTTGGTGCGCGGTGGC GAGGAGTACGATGCTGGCGAGACGACAGTTGGCCAGATGGCTCGTCGGTTAGACCTTGATGAGCATGACCGTCTCTGCTA CCTCTTCGACTACGGCGATGAGTGGCGCTTCTATGCAATTCTGAAAGAGATTACCGAAGACGAACCGCGTGACACCGAAC CGGCAGTTGTCAACCGGAAGGGAGACCCCGTCGATCAGTACGCGCCACCGGACGAACGGCTGTAA
Upstream 100 bases:
>100_bases CCGAGGGCGACGAAACGGATGCCCTCCAAGAGGAAATCAGCGCACTCGAAGACCGCATCGATTCTCTCACCAGCTTCCAA ACTGGAACTGACCTCCAAGA
Downstream 100 bases:
>100_bases CCGAGTGCTCGCGGCCCGTCGCGCTCTTACTGCGGCATCGACCGGATCGCATGGTCCTCGGCTACCTCGACGACATCATA GACGTGGATACCAGACTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MTTYQFRVKFEYAPTELWRDIIVGADRTLDEFQTVLNRAVGLDQDHLWFVGTDQDYWDSDVQYKCPSEFEQSSDGLVRGG EEYDAGETTVGQMARRLDLDEHDRLCYLFDYGDEWRFYAILKEITEDEPRDTEPAVVNRKGDPVDQYAPPDERL
Sequences:
>Translated_154_residues MTTYQFRVKFEYAPTELWRDIIVGADRTLDEFQTVLNRAVGLDQDHLWFVGTDQDYWDSDVQYKCPSEFEQSSDGLVRGG EEYDAGETTVGQMARRLDLDEHDRLCYLFDYGDEWRFYAILKEITEDEPRDTEPAVVNRKGDPVDQYAPPDERL >Mature_153_residues TTYQFRVKFEYAPTELWRDIIVGADRTLDEFQTVLNRAVGLDQDHLWFVGTDQDYWDSDVQYKCPSEFEQSSDGLVRGGE EYDAGETTVGQMARRLDLDEHDRLCYLFDYGDEWRFYAILKEITEDEPRDTEPAVVNRKGDPVDQYAPPDERL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18078; Mature: 17947
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTYQFRVKFEYAPTELWRDIIVGADRTLDEFQTVLNRAVGLDQDHLWFVGTDQDYWDSD CCCEEEEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC VQYKCPSEFEQSSDGLVRGGEEYDAGETTVGQMARRLDLDEHDRLCYLFDYGDEWRFYAI CCEECCHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH LKEITEDEPRDTEPAVVNRKGDPVDQYAPPDERL HHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCC >Mature Secondary Structure TTYQFRVKFEYAPTELWRDIIVGADRTLDEFQTVLNRAVGLDQDHLWFVGTDQDYWDSD CCEEEEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC VQYKCPSEFEQSSDGLVRGGEEYDAGETTVGQMARRLDLDEHDRLCYLFDYGDEWRFYAI CCEECCHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH LKEITEDEPRDTEPAVVNRKGDPVDQYAPPDERL HHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA