| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120079
GI number: 16120079
Start: 92639
End: 93613
Strand: Direct
Name: Not Available
Synonym: VNG6127H
Alternate gene names: NA
Gene position: 92639-93613 (Clockwise)
Preceding gene: 16120078
Following gene: 16120080
Centisome position: 25.35
GC content: 58.87
Gene sequence:
>975_bases ATGCCCTTCAGCGTCACCTGGAATACGCTCTTGGAGAGACTCGATGCCCTTCACGAGGAGGCAACGCTCATCACCCCACT CTCCAACAATCGCATTCGCATCACCGACGTCCAAGACCAACGCGTCATCATCCAGTTCCGTGACCGTGACATTGACCAGA CGCGTCCACTCCAGCGCGACCAGTTTGAAACGCTCTACCGGCGCATCACCGAGGAGTCAGGCGAGTTCAATCTTGATCGA CTACCACCTGACGCTGACCCATATCCCGCCGTCTTGACCATCCACCCGCAGTTTGAACTCGATGCAGACGCTGGAGTTAT CACTCAAACTGAGGGAGAAACGTCAACGCAACTGCGTGACAGTGATCCAGCCACCGACGTCGACGACCGCACTGAGCCAG ACCTAGACGTGTATGCGGACGCGCTCTTGGTTGTTGATGCGCTCGAACGCCACGAGGTGGCCGACCTCTCCGAGCTGGAG ACGGACGCGCTGGGTACCCTCTATACGCTCCTCTCAGATCTTCAGCGGGATGCCAACGACCTTCGGAAGGATGTTGCCGA CGTGTTGTTGAGCCGGCTGCACCACGACCGGCCAGTGAGCGCGCCGTTCGGCTCCGTTCAGCGGACCACGCGCCAGACCC GGTCGCTCAAAGACGACGAGACGGTGCTGGCAGCATTCGAAGACGCGGGGATCGACCGAGATCGCGTGCTTGGCGTCGAC CGAAACAAAGTCGACGACGCGCTGGAGGTAACCGACCTCTCCGAATCGGACGTATACGACATTGAGGAAAGTGAGTATGT GCGGAAAGCCGAGGTTGACGAGGAACGCAAGGAGACGCGTCTCCAAGGGCTCAAGGATCAACTTGCCGCCACCGAGGGCG ACGAAACGGATGCCCTCCAAGAGGAAATCAGCGCACTCGAAGACCGCATCGATTCTCTCACCAGCTTCCAAACTGGAACT GACCTCCAAGAATGA
Upstream 100 bases:
>100_bases ACTGTTCTATGACACCCTGAGGGGGTGTAATACTGCCGTCGTTACGTCTGTAGCACGTCCCCAGACCAACCTTTAGGGCC GTATCGGACAATCGCTACGT
Downstream 100 bases:
>100_bases CCACCTACCAGTTCCGAGTCAAATTCGAATACGCTCCGACTGAACTGTGGCGTGACATCATCGTCGGGGCCGACCGCACC CTCGACGAGTTCCAAACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MPFSVTWNTLLERLDALHEEATLITPLSNNRIRITDVQDQRVIIQFRDRDIDQTRPLQRDQFETLYRRITEESGEFNLDR LPPDADPYPAVLTIHPQFELDADAGVITQTEGETSTQLRDSDPATDVDDRTEPDLDVYADALLVVDALERHEVADLSELE TDALGTLYTLLSDLQRDANDLRKDVADVLLSRLHHDRPVSAPFGSVQRTTRQTRSLKDDETVLAAFEDAGIDRDRVLGVD RNKVDDALEVTDLSESDVYDIEESEYVRKAEVDEERKETRLQGLKDQLAATEGDETDALQEEISALEDRIDSLTSFQTGT DLQE
Sequences:
>Translated_324_residues MPFSVTWNTLLERLDALHEEATLITPLSNNRIRITDVQDQRVIIQFRDRDIDQTRPLQRDQFETLYRRITEESGEFNLDR LPPDADPYPAVLTIHPQFELDADAGVITQTEGETSTQLRDSDPATDVDDRTEPDLDVYADALLVVDALERHEVADLSELE TDALGTLYTLLSDLQRDANDLRKDVADVLLSRLHHDRPVSAPFGSVQRTTRQTRSLKDDETVLAAFEDAGIDRDRVLGVD RNKVDDALEVTDLSESDVYDIEESEYVRKAEVDEERKETRLQGLKDQLAATEGDETDALQEEISALEDRIDSLTSFQTGT DLQE >Mature_323_residues PFSVTWNTLLERLDALHEEATLITPLSNNRIRITDVQDQRVIIQFRDRDIDQTRPLQRDQFETLYRRITEESGEFNLDRL PPDADPYPAVLTIHPQFELDADAGVITQTEGETSTQLRDSDPATDVDDRTEPDLDVYADALLVVDALERHEVADLSELET DALGTLYTLLSDLQRDANDLRKDVADVLLSRLHHDRPVSAPFGSVQRTTRQTRSLKDDETVLAAFEDAGIDRDRVLGVDR NKVDDALEVTDLSESDVYDIEESEYVRKAEVDEERKETRLQGLKDQLAATEGDETDALQEEISALEDRIDSLTSFQTGTD LQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36756; Mature: 36625
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFSVTWNTLLERLDALHEEATLITPLSNNRIRITDVQDQRVIIQFRDRDIDQTRPLQRD CCCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHH QFETLYRRITEESGEFNLDRLPPDADPYPAVLTIHPQFELDADAGVITQTEGETSTQLRD HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCEEEECCCCCCCCCCC SDPATDVDDRTEPDLDVYADALLVVDALERHEVADLSELETDALGTLYTLLSDLQRDAND CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRKDVADVLLSRLHHDRPVSAPFGSVQRTTRQTRSLKDDETVLAAFEDAGIDRDRVLGVD HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHEECCC RNKVDDALEVTDLSESDVYDIEESEYVRKAEVDEERKETRLQGLKDQLAATEGDETDALQ CHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH EEISALEDRIDSLTSFQTGTDLQE HHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PFSVTWNTLLERLDALHEEATLITPLSNNRIRITDVQDQRVIIQFRDRDIDQTRPLQRD CCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCHH QFETLYRRITEESGEFNLDRLPPDADPYPAVLTIHPQFELDADAGVITQTEGETSTQLRD HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCEEEECCCCCCCCCCC SDPATDVDDRTEPDLDVYADALLVVDALERHEVADLSELETDALGTLYTLLSDLQRDAND CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRKDVADVLLSRLHHDRPVSAPFGSVQRTTRQTRSLKDDETVLAAFEDAGIDRDRVLGVD HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHEECCC RNKVDDALEVTDLSESDVYDIEESEYVRKAEVDEERKETRLQGLKDQLAATEGDETDALQ CHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH EEISALEDRIDSLTSFQTGTDLQE HHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA