| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120058
GI number: 16120058
Start: 73259
End: 74656
Strand: Reverse
Name: Not Available
Synonym: VNG6097C
Alternate gene names: NA
Gene position: 74656-73259 (Counterclockwise)
Preceding gene: 16120059
Following gene: 16120057
Centisome position: 20.43
GC content: 50.5
Gene sequence:
>1398_bases ATGGTTAACGCCAACATCTGGTCAAGGGATTTCAATCTTCGTAGCCGCATCGACGAGGATATTTTCGAGCACTTAGACCA GATCGGGTTCGGGGAGATTGACAGAGGTACCGTGACCCAGACCCTGGCTCTCAACATTGATGGAACGTGCAGCACGGACG CTCAGAAGAATCTCGATCCCGATGATGTCAGAGAGAACTGGGAGGATACCAAGGAGGCTATGATCTCCGCGATTGGCTAT CTCAGAAAACAACACGGAGTGAAACGGTCCGAGTTCATTCCGTACGAAGGAATGATTCCTGTGCTCGCATATTATATGTA TGAGACAGATCGCAGGAATGTCGATCCAGACCACCAGGAACAGATAGACCGCTGGTTCTGGCGGGTCGCTCTCTCGGGTC GGTACAGCAGTTCTGCACAGACCAGAATGACTGAAGATAGCAAACTGGTCGACAGGATCATCGCAGGAGAAGATGTTGAA ATCAACTTCACGCCGCAGATTAGCACAGAACGCCTCAAAACAACCAATATCAAGCGGTCCACTTCAGGCCTCAGGAATGC ATTCCTCTGTCTCCTTGCACGGAACCGACCTCTTCACTTCGAGGACGGATCAGAAATTGACCTGACGGAAAACGAGTACG CTGACTTCCGTCTCAACAAGCATCACATCTTTCCGAACGCCTATCTGCGGGGGTTAGACTACTCGAAAAAGGAACGGAAG AGCATTATGGACATTACCTTCATTCCTGCCGAGCTTAACCGCCGTCTCTCGGACACCTCCGCAAAAGAGTACTTTGGAAG ACTCGCAAATGATGTAAATGAGTTTGAGCGAATCATGGATTCGCACCTTATCCCCCATGACGAGGACTCGGGTATCTGGG ACAACGATTATGATACGTTCCAGGAACAGAGGGCGGAACTCGTGTACTCCGAATTCATGGAACTGATCGGGGAGTATTCC GCTCTCGAATCTGATCTCCGAAATGACCCACAGAGCGCCGTCAAAGAGACGGAGGTATTGGTTCGAGACTTCATTGACAG AGAACTCGCTCTAGCAAGCGATGGAGGCACGTTCTGGGGTGAAGTCCCGAACGATGTGAACTCGAACGTTCAGCGGCGTA TTAGCGAGGAGCAAGACAGTAATCCCGAGTTCACTGTTGACTCTGATCGAGACAAACTTGACTTCTGTAACGTGATGGAC TACGCAAAGATCATCAACGCTCGCTGGGACGTTTTCGGGGATTATCTACCATCGAAATCAGCGGTTCAAACCCGGTTTGA GGACTTCGCAGAATTCCGCAACGCCCTCGCTCATCACCGAGAAATCGATCGATTCACCGAAATGGATGGGCAGGTCGCCA TCGAATGGATAAACAGCTGCATTACCGAAGAGTACTGA
Upstream 100 bases:
>100_bases CTAGCTAAATTAATATCGGATTGGTCTTGGGCGAATAGAAATCTTCTCTTCACTGTTCAGCCCTACGCCATGTGGCGGTT TCGCTCTTAACTAAAGACGA
Downstream 100 bases:
>100_bases ACCACCTTCGGTTAGGGGCCGGAGAAACGCTCTCCAGTATTCCGGTTCTGACTCTCGGAACGTACCGTCTAGAAGTGGTT CAGGAACTGAATTTAGGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MVNANIWSRDFNLRSRIDEDIFEHLDQIGFGEIDRGTVTQTLALNIDGTCSTDAQKNLDPDDVRENWEDTKEAMISAIGY LRKQHGVKRSEFIPYEGMIPVLAYYMYETDRRNVDPDHQEQIDRWFWRVALSGRYSSSAQTRMTEDSKLVDRIIAGEDVE INFTPQISTERLKTTNIKRSTSGLRNAFLCLLARNRPLHFEDGSEIDLTENEYADFRLNKHHIFPNAYLRGLDYSKKERK SIMDITFIPAELNRRLSDTSAKEYFGRLANDVNEFERIMDSHLIPHDEDSGIWDNDYDTFQEQRAELVYSEFMELIGEYS ALESDLRNDPQSAVKETEVLVRDFIDRELALASDGGTFWGEVPNDVNSNVQRRISEEQDSNPEFTVDSDRDKLDFCNVMD YAKIINARWDVFGDYLPSKSAVQTRFEDFAEFRNALAHHREIDRFTEMDGQVAIEWINSCITEEY
Sequences:
>Translated_465_residues MVNANIWSRDFNLRSRIDEDIFEHLDQIGFGEIDRGTVTQTLALNIDGTCSTDAQKNLDPDDVRENWEDTKEAMISAIGY LRKQHGVKRSEFIPYEGMIPVLAYYMYETDRRNVDPDHQEQIDRWFWRVALSGRYSSSAQTRMTEDSKLVDRIIAGEDVE INFTPQISTERLKTTNIKRSTSGLRNAFLCLLARNRPLHFEDGSEIDLTENEYADFRLNKHHIFPNAYLRGLDYSKKERK SIMDITFIPAELNRRLSDTSAKEYFGRLANDVNEFERIMDSHLIPHDEDSGIWDNDYDTFQEQRAELVYSEFMELIGEYS ALESDLRNDPQSAVKETEVLVRDFIDRELALASDGGTFWGEVPNDVNSNVQRRISEEQDSNPEFTVDSDRDKLDFCNVMD YAKIINARWDVFGDYLPSKSAVQTRFEDFAEFRNALAHHREIDRFTEMDGQVAIEWINSCITEEY >Mature_465_residues MVNANIWSRDFNLRSRIDEDIFEHLDQIGFGEIDRGTVTQTLALNIDGTCSTDAQKNLDPDDVRENWEDTKEAMISAIGY LRKQHGVKRSEFIPYEGMIPVLAYYMYETDRRNVDPDHQEQIDRWFWRVALSGRYSSSAQTRMTEDSKLVDRIIAGEDVE INFTPQISTERLKTTNIKRSTSGLRNAFLCLLARNRPLHFEDGSEIDLTENEYADFRLNKHHIFPNAYLRGLDYSKKERK SIMDITFIPAELNRRLSDTSAKEYFGRLANDVNEFERIMDSHLIPHDEDSGIWDNDYDTFQEQRAELVYSEFMELIGEYS ALESDLRNDPQSAVKETEVLVRDFIDRELALASDGGTFWGEVPNDVNSNVQRRISEEQDSNPEFTVDSDRDKLDFCNVMD YAKIINARWDVFGDYLPSKSAVQTRFEDFAEFRNALAHHREIDRFTEMDGQVAIEWINSCITEEY
Specific function: Unknown
COG id: COG3472
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54197; Mature: 54197
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNANIWSRDFNLRSRIDEDIFEHLDQIGFGEIDRGTVTQTLALNIDGTCSTDAQKNLDP CCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCH DDVRENWEDTKEAMISAIGYLRKQHGVKRSEFIPYEGMIPVLAYYMYETDRRNVDPDHQE HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHH QIDRWFWRVALSGRYSSSAQTRMTEDSKLVDRIIAGEDVEINFTPQISTERLKTTNIKRS HHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCHHH TSGLRNAFLCLLARNRPLHFEDGSEIDLTENEYADFRLNKHHIFPNAYLRGLDYSKKERK HHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEECCCCEECCHHHHHCCCCCHHHHH SIMDITFIPAELNRRLSDTSAKEYFGRLANDVNEFERIMDSHLIPHDEDSGIWDNDYDTF HHHHEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH QEQRAELVYSEFMELIGEYSALESDLRNDPQSAVKETEVLVRDFIDRELALASDGGTFWG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC EVPNDVNSNVQRRISEEQDSNPEFTVDSDRDKLDFCNVMDYAKIINARWDVFGDYLPSKS CCCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH AVQTRFEDFAEFRNALAHHREIDRFTEMDGQVAIEWINSCITEEY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MVNANIWSRDFNLRSRIDEDIFEHLDQIGFGEIDRGTVTQTLALNIDGTCSTDAQKNLDP CCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCH DDVRENWEDTKEAMISAIGYLRKQHGVKRSEFIPYEGMIPVLAYYMYETDRRNVDPDHQE HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHH QIDRWFWRVALSGRYSSSAQTRMTEDSKLVDRIIAGEDVEINFTPQISTERLKTTNIKRS HHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCHHH TSGLRNAFLCLLARNRPLHFEDGSEIDLTENEYADFRLNKHHIFPNAYLRGLDYSKKERK HHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEECCCCEECCHHHHHCCCCCHHHHH SIMDITFIPAELNRRLSDTSAKEYFGRLANDVNEFERIMDSHLIPHDEDSGIWDNDYDTF HHHHEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH QEQRAELVYSEFMELIGEYSALESDLRNDPQSAVKETEVLVRDFIDRELALASDGGTFWG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC EVPNDVNSNVQRRISEEQDSNPEFTVDSDRDKLDFCNVMDYAKIINARWDVFGDYLPSKS CCCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH AVQTRFEDFAEFRNALAHHREIDRFTEMDGQVAIEWINSCITEEY HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA