| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16119987
GI number: 16119987
Start: 5542
End: 7860
Strand: Reverse
Name: Not Available
Synonym: VNG6011H
Alternate gene names: NA
Gene position: 7860-5542 (Counterclockwise)
Preceding gene: 16119988
Following gene: 16119986
Centisome position: 2.15
GC content: 46.79
Gene sequence:
>2319_bases ATGAGAAAGAGAGTCTCACCCGAAGAACTGGTAGCTGACATACGCCAGACTGCCGACAAACTTAACCAAGAATATCTCAC AGCGGACGAGTATGATCGTAGAGGAGAATACAACAAGTCCACCCCTATCGATAGGTTTGGTTCTTGGAACGCCGCTGTGA GGAAAGCTGGACTAGAGGTCGCTCACAAAGCCCAGCGAAACTCCAAAGAAACTCTACTAGCGGATCTCCGTCGAGTAGCC GACAGTCTCAATCAAGACCATCTTACGATAACTGAGTACGAAGACAAAGGTAACCACGGAGTAGCTACGATTACCAGGAG ACTGGGGTCTTGGAATGATGCTCTTAGAGAAGCGGGATTGACGCCTTTTCAAAAAAAGAATATTGAACCTGAAGACATAC TACGCGATTTGCGCCGGGTAGCCGACGATACGAACGGAAACAGCGTTATAATACCAGAGTACGAGACCCACGGTGACTAC GGTATTACTACTATAGCGGCAAAGTTCGGCTCATGGACCAATGCTGTTAGAAAAGCCGGTTTTACGCCTGCTACAGAAAT CACTGAGGAGGAATTGTTAATCGACCTCCGTCGAATAGCCAACGAGACAGTTGGAGATACCCTCCTCAAATCAGATTATA AAGAATATGGTGAATACAGTCCCAGCACAGCGTTGCGACGGTTCGGAACGTGGGATGAGGTCGTTGAGAAAGTCGGAGCA ACCTCGGGTGATCAAAAGATACCTGACGAAGACCTATTCGCTGATCTACGCCGGGTAGCCGATGAGATTGACCGTCGGTG TTTGACAAAGGCTGATTACGATGAAAGAGGAAAATACAGCGCCAGTACCATCACAGCACGGTTCGAATCGTGGGGAAGTG CTGTTAAGGAAGCTGGTCTATTGCCAGTCTCCCAGTGGTACGGTACTACTGAACAGCCGTCATGGACCCAACTTGGAAGA AGTCCTAATGAATGTAAAATTGCCAAAGAAGACCTTTTAATCGATCTCCGCCGAGTAGCCAACAAAATTGAAGGAGACCG GATCAAAGCACGCGATTACGACCAGGAAGGGAAATATTCTGCAACAACAGTAATCAGACAGTTTGAATCTTGGGTCAATG CTGTTGAAAAAGTTGGATACAAGTCGCATATAAAAAGAATAGCAACTGAAGACCTCAAGCACAGTCTTCAAAATGTCGGT TCTGAAGACGAAGTACCGACATCTACTGAGTATGCAGAAAACGGCAAATATCATTATCAAACGGTAATAGAGCGTTTTGG CAGCTGGAGCAATGCAGTTCAGGCCGCTGGATATACATCGTACTCTCCTCCACGTACTTCGTGGATTCCTTCAGAAGAAT TAATCGCCAGTATTCAGACGCTCAGCTCTGAAGATGAGCCACCAACATCTATAGAGTATGATGAGAGTGGAAAGTTTGGG ACAGCTACTGTAGTAAGGCGCTTTGGCACATGGGCCAATGCTCTTCAGGAAGCTGGATACACCAGCAAACAGATCGACAG ACTCCTTCCATATACAGACGATGTAGAAGATGAAGAGTTGCTTCGTGAACTTCGCAGATTAGCAGATGGAGAGGTCGGAC CCACAACCCATACAATCAAAACCGAAGGAGATTACAGTACAACACCATACTTCGACCGTTTTGGGACAATATGGCAATCA GTAGTATGTGCGGGGCTAAAACCATATTCCAGAACACCAGTAACAAAAACCCAGTACGTGGATTTTATTGAGACTGTTCT TGATTACGGACATCCGACCCGCCAACTCACAGGCTTGTTACTCGCGTTTACTGGACTCGAAACAACTCTCACGGGGAAAT TCTCAACTGAGTGGGTTGTCAATCTCAATACAAGTGAAGAGACTGCGATTCGAGTACCGAAAGAACATCTACAATCCGAT GAAGACTGGATTCTCAAAGTGCCAAGCAAGTGGCATAACCCGGAGACAAACCAGCAGGAGACGACACATATTGAAGGATT GTTGAATTGGGCCGTTAATCACGAACAAGAGCTTTACTCGTCAACAAGCGGCGTAGAATCCTTCTTATCAATGGTCAACG AGAGCATAGGGATAGAAGGTTCTCGTGAGAGCCATCTCACGATGGCCCTCGGCACACATCTTGCTGAACGCGGAGCACCC CCATGGTTCATTCAAAAGCAGACTGGTGTCGGATTTCGAGGAATGGATGCAGAAGTAGAAGACTTCTATCTCTGGAATTA TGTTCACCAGGGAATTAACCACCCAGACTACAATCCACCAGATGTTGTCCTCAACCCGACTGGTCGCATCATCGATTAA
Upstream 100 bases:
>100_bases AATTAACAAAACAGGGCACGCCGACCCAGACTCGCTCAAACCATATGTGATGTTTGCTGCAAACGAGATCGATGCCAAAG AAGAGCAACAGTGGTACTGA
Downstream 100 bases:
>100_bases TCCTCTGGTACCACTGGTTATGGCTTTAGCCACAAGCGTGCGATAAGTCGCCCGTGTAGGGTGAATCATTGCTCAGCTTT GCACGTCAGCGTCAGAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 772; Mature: 772
Protein sequence:
>772_residues MRKRVSPEELVADIRQTADKLNQEYLTADEYDRRGEYNKSTPIDRFGSWNAAVRKAGLEVAHKAQRNSKETLLADLRRVA DSLNQDHLTITEYEDKGNHGVATITRRLGSWNDALREAGLTPFQKKNIEPEDILRDLRRVADDTNGNSVIIPEYETHGDY GITTIAAKFGSWTNAVRKAGFTPATEITEEELLIDLRRIANETVGDTLLKSDYKEYGEYSPSTALRRFGTWDEVVEKVGA TSGDQKIPDEDLFADLRRVADEIDRRCLTKADYDERGKYSASTITARFESWGSAVKEAGLLPVSQWYGTTEQPSWTQLGR SPNECKIAKEDLLIDLRRVANKIEGDRIKARDYDQEGKYSATTVIRQFESWVNAVEKVGYKSHIKRIATEDLKHSLQNVG SEDEVPTSTEYAENGKYHYQTVIERFGSWSNAVQAAGYTSYSPPRTSWIPSEELIASIQTLSSEDEPPTSIEYDESGKFG TATVVRRFGTWANALQEAGYTSKQIDRLLPYTDDVEDEELLRELRRLADGEVGPTTHTIKTEGDYSTTPYFDRFGTIWQS VVCAGLKPYSRTPVTKTQYVDFIETVLDYGHPTRQLTGLLLAFTGLETTLTGKFSTEWVVNLNTSEETAIRVPKEHLQSD EDWILKVPSKWHNPETNQQETTHIEGLLNWAVNHEQELYSSTSGVESFLSMVNESIGIEGSRESHLTMALGTHLAERGAP PWFIQKQTGVGFRGMDAEVEDFYLWNYVHQGINHPDYNPPDVVLNPTGRIID
Sequences:
>Translated_772_residues MRKRVSPEELVADIRQTADKLNQEYLTADEYDRRGEYNKSTPIDRFGSWNAAVRKAGLEVAHKAQRNSKETLLADLRRVA DSLNQDHLTITEYEDKGNHGVATITRRLGSWNDALREAGLTPFQKKNIEPEDILRDLRRVADDTNGNSVIIPEYETHGDY GITTIAAKFGSWTNAVRKAGFTPATEITEEELLIDLRRIANETVGDTLLKSDYKEYGEYSPSTALRRFGTWDEVVEKVGA TSGDQKIPDEDLFADLRRVADEIDRRCLTKADYDERGKYSASTITARFESWGSAVKEAGLLPVSQWYGTTEQPSWTQLGR SPNECKIAKEDLLIDLRRVANKIEGDRIKARDYDQEGKYSATTVIRQFESWVNAVEKVGYKSHIKRIATEDLKHSLQNVG SEDEVPTSTEYAENGKYHYQTVIERFGSWSNAVQAAGYTSYSPPRTSWIPSEELIASIQTLSSEDEPPTSIEYDESGKFG TATVVRRFGTWANALQEAGYTSKQIDRLLPYTDDVEDEELLRELRRLADGEVGPTTHTIKTEGDYSTTPYFDRFGTIWQS VVCAGLKPYSRTPVTKTQYVDFIETVLDYGHPTRQLTGLLLAFTGLETTLTGKFSTEWVVNLNTSEETAIRVPKEHLQSD EDWILKVPSKWHNPETNQQETTHIEGLLNWAVNHEQELYSSTSGVESFLSMVNESIGIEGSRESHLTMALGTHLAERGAP PWFIQKQTGVGFRGMDAEVEDFYLWNYVHQGINHPDYNPPDVVLNPTGRIID >Mature_772_residues MRKRVSPEELVADIRQTADKLNQEYLTADEYDRRGEYNKSTPIDRFGSWNAAVRKAGLEVAHKAQRNSKETLLADLRRVA DSLNQDHLTITEYEDKGNHGVATITRRLGSWNDALREAGLTPFQKKNIEPEDILRDLRRVADDTNGNSVIIPEYETHGDY GITTIAAKFGSWTNAVRKAGFTPATEITEEELLIDLRRIANETVGDTLLKSDYKEYGEYSPSTALRRFGTWDEVVEKVGA TSGDQKIPDEDLFADLRRVADEIDRRCLTKADYDERGKYSASTITARFESWGSAVKEAGLLPVSQWYGTTEQPSWTQLGR SPNECKIAKEDLLIDLRRVANKIEGDRIKARDYDQEGKYSATTVIRQFESWVNAVEKVGYKSHIKRIATEDLKHSLQNVG SEDEVPTSTEYAENGKYHYQTVIERFGSWSNAVQAAGYTSYSPPRTSWIPSEELIASIQTLSSEDEPPTSIEYDESGKFG TATVVRRFGTWANALQEAGYTSKQIDRLLPYTDDVEDEELLRELRRLADGEVGPTTHTIKTEGDYSTTPYFDRFGTIWQS VVCAGLKPYSRTPVTKTQYVDFIETVLDYGHPTRQLTGLLLAFTGLETTLTGKFSTEWVVNLNTSEETAIRVPKEHLQSD EDWILKVPSKWHNPETNQQETTHIEGLLNWAVNHEQELYSSTSGVESFLSMVNESIGIEGSRESHLTMALGTHLAERGAP PWFIQKQTGVGFRGMDAEVEDFYLWNYVHQGINHPDYNPPDVVLNPTGRIID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87268; Mature: 87268
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKRVSPEELVADIRQTADKLNQEYLTADEYDRRGEYNKSTPIDRFGSWNAAVRKAGLEV CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHH AHKAQRNSKETLLADLRRVADSLNQDHLTITEYEDKGNHGVATITRRLGSWNDALREAGL HHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCC TPFQKKNIEPEDILRDLRRVADDTNGNSVIIPEYETHGDYGITTIAAKFGSWTNAVRKAG CCHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC FTPATEITEEELLIDLRRIANETVGDTLLKSDYKEYGEYSPSTALRRFGTWDEVVEKVGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCC TSGDQKIPDEDLFADLRRVADEIDRRCLTKADYDERGKYSASTITARFESWGSAVKEAGL CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCC LPVSQWYGTTEQPSWTQLGRSPNECKIAKEDLLIDLRRVANKIEGDRIKARDYDQEGKYS CCHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHH ATTVIRQFESWVNAVEKVGYKSHIKRIATEDLKHSLQNVGSEDEVPTSTEYAENGKYHYQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHH TVIERFGSWSNAVQAAGYTSYSPPRTSWIPSEELIASIQTLSSEDEPPTSIEYDESGKFG HHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH TATVVRRFGTWANALQEAGYTSKQIDRLLPYTDDVEDEELLRELRRLADGEVGPTTHTIK HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE TEGDYSTTPYFDRFGTIWQSVVCAGLKPYSRTPVTKTQYVDFIETVLDYGHPTRQLTGLL ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH LAFTGLETTLTGKFSTEWVVNLNTSEETAIRVPKEHLQSDEDWILKVPSKWHNPETNQQE HHHHCCCCEEECCCCCEEEEEECCCCCHHEECCHHHCCCCCCEEEECCCCCCCCCCCCHH TTHIEGLLNWAVNHEQELYSSTSGVESFLSMVNESIGIEGSRESHLTMALGTHLAERGAP HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC PWFIQKQTGVGFRGMDAEVEDFYLWNYVHQGINHPDYNPPDVVLNPTGRIID CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCC >Mature Secondary Structure MRKRVSPEELVADIRQTADKLNQEYLTADEYDRRGEYNKSTPIDRFGSWNAAVRKAGLEV CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHH AHKAQRNSKETLLADLRRVADSLNQDHLTITEYEDKGNHGVATITRRLGSWNDALREAGL HHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCC TPFQKKNIEPEDILRDLRRVADDTNGNSVIIPEYETHGDYGITTIAAKFGSWTNAVRKAG CCHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC FTPATEITEEELLIDLRRIANETVGDTLLKSDYKEYGEYSPSTALRRFGTWDEVVEKVGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCC TSGDQKIPDEDLFADLRRVADEIDRRCLTKADYDERGKYSASTITARFESWGSAVKEAGL CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCC LPVSQWYGTTEQPSWTQLGRSPNECKIAKEDLLIDLRRVANKIEGDRIKARDYDQEGKYS CCHHHHCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHH ATTVIRQFESWVNAVEKVGYKSHIKRIATEDLKHSLQNVGSEDEVPTSTEYAENGKYHYQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHH TVIERFGSWSNAVQAAGYTSYSPPRTSWIPSEELIASIQTLSSEDEPPTSIEYDESGKFG HHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH TATVVRRFGTWANALQEAGYTSKQIDRLLPYTDDVEDEELLRELRRLADGEVGPTTHTIK HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE TEGDYSTTPYFDRFGTIWQSVVCAGLKPYSRTPVTKTQYVDFIETVLDYGHPTRQLTGLL ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH LAFTGLETTLTGKFSTEWVVNLNTSEETAIRVPKEHLQSDEDWILKVPSKWHNPETNQQE HHHHCCCCEEECCCCCEEEEEECCCCCHHEECCHHHCCCCCCEEEECCCCCCCCCCCCHH TTHIEGLLNWAVNHEQELYSSTSGVESFLSMVNESIGIEGSRESHLTMALGTHLAERGAP HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC PWFIQKQTGVGFRGMDAEVEDFYLWNYVHQGINHPDYNPPDVVLNPTGRIID CEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA