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The map label for this gene is traM

Identifier: 16119949

GI number: 16119949

Start: 150171

End: 150479

Strand: Direct

Name: traM

Synonym: Atu6131

Alternate gene names: 16119949

Gene position: 150171-150479 (Clockwise)

Preceding gene: 16119948

Following gene: 159161984

Centisome position: 70.1

GC content: 54.69

Gene sequence:

>309_bases
ATGGAATCGGAAGATGCAACATTGACGAAAAAAGTTGAGCTCCGGCCACTGGTCGGCTTAACTCGTGGACTACACCCGGC
TGACCTCGAGAAACTGACCATAGACGCAATCCGTGCGCATCGACGACTGGTCGAAAAGGCCGACGAACTTTTCCAGGCCC
TGCCGGAAAGCTATAAGTCGGGAAAGGAAGTCGGAGGCCCACAGCATCTGTGTTACATCGAGGCCAGTATCGAGATGCAC
GCGCAGATGAGCGCTGTCAGCACGCTGATCAGCATTCTTGGCTATATCCCGAACGCCACCGTGAACTGA

Upstream 100 bases:

>100_bases
CTCAGGGCCGATTCATCTCGGATTCTAACCCCCGGCTAGGGTTCAAAGGGTTCAACGTCAGCGGGGGCGCACCGCAGACA
AAACCAGGGTTAGGTCAGGA

Downstream 100 bases:

>100_bases
ACCGGTTTCCGTTTGTCTCATGGCTAATTTTTATAGCGGGCTATGATGTCATACCCTGAACTATTGCGGCAGCTCAGACC
CGCTATCTTCATCGGAGGAA

Product: TraR antiactivator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MESEDATLTKKVELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQALPESYKSGKEVGGPQHLCYIEASIEMH
AQMSAVSTLISILGYIPNATVN

Sequences:

>Translated_102_residues
MESEDATLTKKVELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQALPESYKSGKEVGGPQHLCYIEASIEMH
AQMSAVSTLISILGYIPNATVN
>Mature_102_residues
MESEDATLTKKVELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQALPESYKSGKEVGGPQHLCYIEASIEMH
AQMSAVSTLISILGYIPNATVN

Specific function: Negatively regulates conjugation and the expression of tra genes by antagonizing traR/AAI-dependent activation. TraM may either bind or modify traR or AAI making them unavailable. Alternatively, traM may bind tra promoters preventing traR activation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAM_AGRT5 (Q44452)

Other databases:

- EMBL:   AF010180
- EMBL:   AE007871
- PIR:   AI3243
- PIR:   T03423
- RefSeq:   NP_396654.1
- ProteinModelPortal:   Q44452
- SMR:   Q44452
- GeneID:   1137454
- GenomeReviews:   AE007871_GR
- KEGG:   atu:Atu6131
- eggNOG:   NOG149982
- HOGENOM:   HBG300447
- OMA:   MHAQMSA
- ProtClustDB:   CLSK539900
- BioCyc:   ATUM176299-1:ATU6131-MONOMER
- GO:   GO:0000746
- GO:   GO:0006350
- InterPro:   IPR015309
- PIRSF:   PIRSF017930

Pfam domain/function: PF09228 Prok-TraM; SSF109631 Transcript_repress_TraM

EC number: NA

Molecular weight: Translated: 11227; Mature: 11227

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESEDATLTKKVELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQALPESYKS
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKEVGGPQHLCYIEASIEMHAQMSAVSTLISILGYIPNATVN
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MESEDATLTKKVELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQALPESYKS
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKEVGGPQHLCYIEASIEMHAQMSAVSTLISILGYIPNATVN
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7814335; 11743193; 11743194