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The map label for this gene is traH

Identifier: 16119948

GI number: 16119948

Start: 149016

End: 149645

Strand: Direct

Name: traH

Synonym: Atu6130

Alternate gene names: NA

Gene position: 149016-149645 (Clockwise)

Preceding gene: 229007180

Following gene: 16119949

Centisome position: 69.56

GC content: 61.75

Gene sequence:

>630_bases
ATGGTCGATTCCGCCCTCATCAAGGAATGCAGCGATCCCGGCCTGAAACCCGCGATCGTCGAACAGTTCATCGAACGGGC
AGGGGCGCCGGACCCGCTCGCGGTCACTGTCCGCTCCGGCAACCGCATCGTGCTTGTGCCGAGGCCGACAACGCCGGACG
AGGCGCTCGCATTGATACGCCAGAACCTCGGTCGCAATATCGTTCGGGTCGGCTTGACGCAGTATCCCGCCGGGCTCGGT
ATCGTCGAGGCGGGCCAGTTGAAGCCGGACCTGATCGAGCCTTGCGAAAACATCAAAATGGGCACGGCCCTGTTCGCCAA
AGTCTATCGTATCGTCACCAAATGGTACGGTAACCCTACCGAAAGCGAGGTCCTTCCGCAGGTTTTTGAAGACGCGATCA
TCGCATGGCAAACGGGGTATTTCGAGGGGACAGCGGTGTTCCGGGCAGCCGATCCGGGCGACGTGAAGCTGCCAGAGCCG
GATCCTGGGGTGGAAGCGGAAACGTCCGAAGCCGGTAGTGACAAGATGAAGGGCGGCAACGTCGATACTGCACTCGAGGC
GGAACCAGCTGACCCGAACAAGGCCGGTATTCGGATCGACCTTTCCGGCATCGGCGCGCGCGGGAAGTGA

Upstream 100 bases:

>100_bases
ACGTCGATCGTCGCCATCCAACAAGCAGGCGTGATCGCCTGGGCGAAACTCTTCGGGCGACCCGTCGTCACGGCTTTCAA
CACATAAGGAGACTTTCGCG

Downstream 100 bases:

>100_bases
GGAACAGGTTCCTCGCGTCTGCGTCGATGAACGCGGGCCAGGAGCGAAAAATTGCTCGGTCCGTGTGCCAAGCGAATCGC
AGTTAATGAGACCGTGGCGG

Product: conjugal transfer protein TraH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MVDSALIKECSDPGLKPAIVEQFIERAGAPDPLAVTVRSGNRIVLVPRPTTPDEALALIRQNLGRNIVRVGLTQYPAGLG
IVEAGQLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPTESEVLPQVFEDAIIAWQTGYFEGTAVFRAADPGDVKLPEP
DPGVEAETSEAGSDKMKGGNVDTALEAEPADPNKAGIRIDLSGIGARGK

Sequences:

>Translated_209_residues
MVDSALIKECSDPGLKPAIVEQFIERAGAPDPLAVTVRSGNRIVLVPRPTTPDEALALIRQNLGRNIVRVGLTQYPAGLG
IVEAGQLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPTESEVLPQVFEDAIIAWQTGYFEGTAVFRAADPGDVKLPEP
DPGVEAETSEAGSDKMKGGNVDTALEAEPADPNKAGIRIDLSGIGARGK
>Mature_209_residues
MVDSALIKECSDPGLKPAIVEQFIERAGAPDPLAVTVRSGNRIVLVPRPTTPDEALALIRQNLGRNIVRVGLTQYPAGLG
IVEAGQLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPTESEVLPQVFEDAIIAWQTGYFEGTAVFRAADPGDVKLPEP
DPGVEAETSEAGSDKMKGGNVDTALEAEPADPNKAGIRIDLSGIGARGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid conjugal transfer region I ORFR2 and ORFR3 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010680 [H]

Pfam domain/function: PF06871 TraH_2 [H]

EC number: NA

Molecular weight: Translated: 22262; Mature: 22262

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDSALIKECSDPGLKPAIVEQFIERAGAPDPLAVTVRSGNRIVLVPRPTTPDEALALIR
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHH
QNLGRNIVRVGLTQYPAGLGIVEAGQLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPT
HHHCCCEEEHHHHHCCCCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
ESEVLPQVFEDAIIAWQTGYFEGTAVFRAADPGDVKLPEPDPGVEAETSEAGSDKMKGGN
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VDTALEAEPADPNKAGIRIDLSGIGARGK
CCCEEECCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MVDSALIKECSDPGLKPAIVEQFIERAGAPDPLAVTVRSGNRIVLVPRPTTPDEALALIR
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHH
QNLGRNIVRVGLTQYPAGLGIVEAGQLKPDLIEPCENIKMGTALFAKVYRIVTKWYGNPT
HHHCCCEEEHHHHHCCCCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
ESEVLPQVFEDAIIAWQTGYFEGTAVFRAADPGDVKLPEPDPGVEAETSEAGSDKMKGGN
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VDTALEAEPADPNKAGIRIDLSGIGARGK
CCCEEECCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]