| Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
|---|---|
| Accession | NC_003065 |
| Length | 214,233 |
Click here to switch to the map view.
The map label for this gene is virE3
Identifier: 16119806
GI number: 16119806
Start: 207993
End: 210047
Strand: Direct
Name: virE3
Synonym: Atu6191
Alternate gene names: NA
Gene position: 207993-210047 (Clockwise)
Preceding gene: 16119805
Following gene: NA
Centisome position: 97.09
GC content: 52.26
Gene sequence:
>2055_bases ATGGTCGACACGACGAAGAAGAGTGTCGCGAAGTCGCTTACGGCTGACATGCGCCGTTCTGCTAAGCGGCTTTCTAAGCA AATGCGTAAAGCCTCGCTTACTGAAGAGGAGGCAACAAGGAATCTAGCCCGGCTCGAAACGCCGGACCAGAAGCGAAAAT ATGTCGCCGATATGCAGATAATCGACAAGCTGGAAGACGGCTTTCGAGGCGAAATAAGCTATAAAATGCTGGGAAATAAA CAGCTTCGGGTCGACAGCCCAAAAGAATTAACGCGCGAGCATGGTATAATAAGAAAAACAAGAAAGGTTCTGAAGCGTAA CGCAGAGACTGGCAATGTTTACTTGGGTCTCCACGAAAAGAAGACCTGGAGGAGCGTTAGCAGCCATCTTTATGCCGAGG ACGGTACACTTCGCGCGAAGCATGTGAAATACAAAGACGGACGCTTTGAAGAAAAATGGGAACGAGACGAAAATGGCCTG CTGTTCCGCACGCAGTTTGTCAACCGAAATCGGCTATTTCAACCTATTTCCGAGAAGGTCAGCACACCCTACCGGAGCGG ACCGGAAAACCGGCTCTTTCGTGAACTAACCCGTCGAAAAGGTTCCAAGCAGGAAACTTTTGAGCGGGACGAAAAAGGCA ACCTCGAGCTCATCGGCAGCAAACGTCTCGGCTTTTCCAAGAATTCGACGAAAGCCGTGGATCGTCAGACCTCTCAGACG ACGATTCGAAAACTTGGTGGCGCATTCAGCAAATCTTATAGATCCCTGCTAGACACAGAGGGCAACGAACTTGGCCGAGA TATATCGAGTCATCGACGGCTCTTCAACAAGCGATCGGCTGTCTACGATGAGGCTAGCGGGCAATTGACGAGCACCAAGC ATACGTTCGGTAAGATCTACAAGAGTGAAACAGCGTATTTGAACGCTGATATCAAAAAAGTCTCAAAAAAGATACTCGGC GTGACGGTTCGTCGGAAACTGACGACGCTAAGTGAACAAGAACACGACGCTCAGAAGCTGCGAAATTCGGAATCCATTGA GCATAGGAAGGCTTGGCAAGAGCGCGCAGTTATCCCTAGATCGCCTCCACGGGAGACGGCAAATGTGGATTCGGCGCCGC AGTCGCATCTGGTCAACTCTCTTAGAGACGGCCGTCGTGATGAGGCTGAGCCTAGGGTTGTGCCTGCAAAAGACCGACGA TTAGAAGGCGTTATACAAAATTCACCCTTGTTTCGGCAACCGAACTCCGAGCGACGGGTCGGTTCCCAAACACTACCTCC ATCGTCAAATGTGCGTGCCTCAGATCCAGTTTTTCCAAGGGAAGGCGCTAAGTCGGAAAAAGGGCCAGTGGCGGTCAATC TCCAGCGTGATAATGAAAGGGAAAAGCAAGAGGAAAAAAACCTCAGTGAGAGGCGGGGAAATCTCTTCCGGTCAAGCCGG TCAATAACAGAGACGTCGTTTCCCGGATCGCCGGAAAGAATAACGATGTTAGGTTCGCGGCGGGCCTCGATAAACCCATC CGCCGATCCGCAATCGCCGGTCGGCAGAACGGATTCCCAAGCGCCGCCGATGTCCTTATTTCCGATCAATAATCATCAGT CGGATCCAAACGAGCAAGAGCTCTTGAGTTTCCTGCATAGCGTGCCAGTCCCGCCGCCTTTGGAAGTACATGGCGCACCA GGCGGGCGTGTTGAGGACAGCCTCCGTGGAGCTTCCGGAGACAGCCTGGTGCGAACGAGTTCAGTGTCGGAGAGTGTGTT CGATGAACATTCGCAAGGGCCTTTGGAACGCGATCACTCGACCAATGCGACAAGTGAGCGCTTTGATCCGCAGGCTTTGT TTGGCGAACCGGGCTTGTCGCGCGTCTCAGAAACACGACCAGAACTCTCGATGCAAGGCGACCATTTGACAAATTCGGAA CAGCAAGCGTTACTGAATGAACTGCTTAGTGTGCCATTACCGGGTCCTTTGCCGAAGGCGGATCATGAGCGACCGAGGGT TTTGGAAAGCTCACGGAGCCGAGAGCGCTCCATGTCAGGAGGGCTTTCACTTTAG
Upstream 100 bases:
>100_bases CCGACCGCGCGGCCCAACCGTAAACAGTCTGTAGATTTCCTGATACCGCGTCAGTGACGAAGCCCTTTAGTTCAAAATAT GCATTTGAAAGGATTCAACA
Downstream 100 bases:
>100_bases AATGAAATTACCGATTCAAGTGTCCACCCAGTGGCTTGATTGAAACAGGCCAAGATGTGCGGAACACACCACTTCGAGGT GGTGCTCGAGGAATAGTTCA
Product: virA/G regulated protein
Products: NA
Alternate protein names: Effector Protein; Virulence VirE3 Protein
Number of amino acids: Translated: 684; Mature: 684
Protein sequence:
>684_residues MVDTTKKSVAKSLTADMRRSAKRLSKQMRKASLTEEEATRNLARLETPDQKRKYVADMQIIDKLEDGFRGEISYKMLGNK QLRVDSPKELTREHGIIRKTRKVLKRNAETGNVYLGLHEKKTWRSVSSHLYAEDGTLRAKHVKYKDGRFEEKWERDENGL LFRTQFVNRNRLFQPISEKVSTPYRSGPENRLFRELTRRKGSKQETFERDEKGNLELIGSKRLGFSKNSTKAVDRQTSQT TIRKLGGAFSKSYRSLLDTEGNELGRDISSHRRLFNKRSAVYDEASGQLTSTKHTFGKIYKSETAYLNADIKKVSKKILG VTVRRKLTTLSEQEHDAQKLRNSESIEHRKAWQERAVIPRSPPRETANVDSAPQSHLVNSLRDGRRDEAEPRVVPAKDRR LEGVIQNSPLFRQPNSERRVGSQTLPPSSNVRASDPVFPREGAKSEKGPVAVNLQRDNEREKQEEKNLSERRGNLFRSSR SITETSFPGSPERITMLGSRRASINPSADPQSPVGRTDSQAPPMSLFPINNHQSDPNEQELLSFLHSVPVPPPLEVHGAP GGRVEDSLRGASGDSLVRTSSVSESVFDEHSQGPLERDHSTNATSERFDPQALFGEPGLSRVSETRPELSMQGDHLTNSE QQALLNELLSVPLPGPLPKADHERPRVLESSRSRERSMSGGLSL
Sequences:
>Translated_684_residues MVDTTKKSVAKSLTADMRRSAKRLSKQMRKASLTEEEATRNLARLETPDQKRKYVADMQIIDKLEDGFRGEISYKMLGNK QLRVDSPKELTREHGIIRKTRKVLKRNAETGNVYLGLHEKKTWRSVSSHLYAEDGTLRAKHVKYKDGRFEEKWERDENGL LFRTQFVNRNRLFQPISEKVSTPYRSGPENRLFRELTRRKGSKQETFERDEKGNLELIGSKRLGFSKNSTKAVDRQTSQT TIRKLGGAFSKSYRSLLDTEGNELGRDISSHRRLFNKRSAVYDEASGQLTSTKHTFGKIYKSETAYLNADIKKVSKKILG VTVRRKLTTLSEQEHDAQKLRNSESIEHRKAWQERAVIPRSPPRETANVDSAPQSHLVNSLRDGRRDEAEPRVVPAKDRR LEGVIQNSPLFRQPNSERRVGSQTLPPSSNVRASDPVFPREGAKSEKGPVAVNLQRDNEREKQEEKNLSERRGNLFRSSR SITETSFPGSPERITMLGSRRASINPSADPQSPVGRTDSQAPPMSLFPINNHQSDPNEQELLSFLHSVPVPPPLEVHGAP GGRVEDSLRGASGDSLVRTSSVSESVFDEHSQGPLERDHSTNATSERFDPQALFGEPGLSRVSETRPELSMQGDHLTNSE QQALLNELLSVPLPGPLPKADHERPRVLESSRSRERSMSGGLSL >Mature_684_residues MVDTTKKSVAKSLTADMRRSAKRLSKQMRKASLTEEEATRNLARLETPDQKRKYVADMQIIDKLEDGFRGEISYKMLGNK QLRVDSPKELTREHGIIRKTRKVLKRNAETGNVYLGLHEKKTWRSVSSHLYAEDGTLRAKHVKYKDGRFEEKWERDENGL LFRTQFVNRNRLFQPISEKVSTPYRSGPENRLFRELTRRKGSKQETFERDEKGNLELIGSKRLGFSKNSTKAVDRQTSQT TIRKLGGAFSKSYRSLLDTEGNELGRDISSHRRLFNKRSAVYDEASGQLTSTKHTFGKIYKSETAYLNADIKKVSKKILG VTVRRKLTTLSEQEHDAQKLRNSESIEHRKAWQERAVIPRSPPRETANVDSAPQSHLVNSLRDGRRDEAEPRVVPAKDRR LEGVIQNSPLFRQPNSERRVGSQTLPPSSNVRASDPVFPREGAKSEKGPVAVNLQRDNEREKQEEKNLSERRGNLFRSSR SITETSFPGSPERITMLGSRRASINPSADPQSPVGRTDSQAPPMSLFPINNHQSDPNEQELLSFLHSVPVPPPLEVHGAP GGRVEDSLRGASGDSLVRTSSVSESVFDEHSQGPLERDHSTNATSERFDPQALFGEPGLSRVSETRPELSMQGDHLTNSE QQALLNELLSVPLPGPLPKADHERPRVLESSRSRERSMSGGLSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77241; Mature: 77241
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDTTKKSVAKSLTADMRRSAKRLSKQMRKASLTEEEATRNLARLETPDQKRKYVADMQI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH IDKLEDGFRGEISYKMLGNKQLRVDSPKELTREHGIIRKTRKVLKRNAETGNVYLGLHEK HHHHHCCCCCEEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCH KTWRSVSSHLYAEDGTLRAKHVKYKDGRFEEKWERDENGLLFRTQFVNRNRLFQPISEKV HHHHHHHHHEECCCCCEEEEEEECCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH STPYRSGPENRLFRELTRRKGSKQETFERDEKGNLELIGSKRLGFSKNSTKAVDRQTSQT CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH TIRKLGGAFSKSYRSLLDTEGNELGRDISSHRRLFNKRSAVYDEASGQLTSTKHTFGKIY HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH KSETAYLNADIKKVSKKILGVTVRRKLTTLSEQEHDAQKLRNSESIEHRKAWQERAVIPR HCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC SPPRETANVDSAPQSHLVNSLRDGRRDEAEPRVVPAKDRRLEGVIQNSPLFRQPNSERRV CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCHHHHC GSQTLPPSSNVRASDPVFPREGAKSEKGPVAVNLQRDNEREKQEEKNLSERRGNLFRSSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC SITETSFPGSPERITMLGSRRASINPSADPQSPVGRTDSQAPPMSLFPINNHQSDPNEQE CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH LLSFLHSVPVPPPLEVHGAPGGRVEDSLRGASGDSLVRTSSVSESVFDEHSQGPLERDHS HHHHHHHCCCCCCCEECCCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCC TNATSERFDPQALFGEPGLSRVSETRPELSMQGDHLTNSEQQALLNELLSVPLPGPLPKA CCCCHHCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC DHERPRVLESSRSRERSMSGGLSL CCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MVDTTKKSVAKSLTADMRRSAKRLSKQMRKASLTEEEATRNLARLETPDQKRKYVADMQI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH IDKLEDGFRGEISYKMLGNKQLRVDSPKELTREHGIIRKTRKVLKRNAETGNVYLGLHEK HHHHHCCCCCEEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCH KTWRSVSSHLYAEDGTLRAKHVKYKDGRFEEKWERDENGLLFRTQFVNRNRLFQPISEKV HHHHHHHHHEECCCCCEEEEEEECCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH STPYRSGPENRLFRELTRRKGSKQETFERDEKGNLELIGSKRLGFSKNSTKAVDRQTSQT CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH TIRKLGGAFSKSYRSLLDTEGNELGRDISSHRRLFNKRSAVYDEASGQLTSTKHTFGKIY HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH KSETAYLNADIKKVSKKILGVTVRRKLTTLSEQEHDAQKLRNSESIEHRKAWQERAVIPR HCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCC SPPRETANVDSAPQSHLVNSLRDGRRDEAEPRVVPAKDRRLEGVIQNSPLFRQPNSERRV CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCHHHHC GSQTLPPSSNVRASDPVFPREGAKSEKGPVAVNLQRDNEREKQEEKNLSERRGNLFRSSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC SITETSFPGSPERITMLGSRRASINPSADPQSPVGRTDSQAPPMSLFPINNHQSDPNEQE CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH LLSFLHSVPVPPPLEVHGAPGGRVEDSLRGASGDSLVRTSSVSESVFDEHSQGPLERDHS HHHHHHHCCCCCCCEECCCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCC TNATSERFDPQALFGEPGLSRVSETRPELSMQGDHLTNSEQQALLNELLSVPLPGPLPKA CCCCHHCCCCHHHCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC DHERPRVLESSRSRERSMSGGLSL CCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA