| Definition | Petrotoga mobilis SJ95 chromosome, complete genome. |
|---|---|
| Accession | NC_010003 |
| Length | 2,169,548 |
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The map label for this gene is oppD [H]
Identifier: 160903215
GI number: 160903215
Start: 1954377
End: 1955366
Strand: Direct
Name: oppD [H]
Synonym: Pmob_1784
Alternate gene names: 160903215
Gene position: 1954377-1955366 (Clockwise)
Preceding gene: 160903214
Following gene: 160903216
Centisome position: 90.08
GC content: 36.97
Gene sequence:
>990_bases GTGCTTGAAGTGAAAAATCTGAAAGTTTATTATAAAAGTGAAGAAGGGATTATAAAAGCGGTTGACGATGTTAGTTTTAA GGTAAAAGACGGAGAAACCCTGGGCCTAGTGGGAGAATCGGGCTGTGGGAAGTCTACCTTAGGACAAGCTATAATGAAAA TATTACCGTTAAATGCACGATTGTACGGCGAAATTATATTAAATGGTCAAAATATTATTAAAATGAACGAAAAACAAATG CGAGAAATTCGTGGTAGAGATATTACCATGATCTTTCAAGATCCGATGACTTCTCTCAATCCCATCATGAAAGTCAAAGA CCTGTTTGTTGAAATTGTAAGAGCTCATTTTCCCGATATATCTAAAGAAAAAGCTATAGAAATGGGTGGTGGTGTCCTAA AGGATGTGGGAATAGACCCAAGCAGGATGAACCAATATACATTTCAATTCAGTGGTGGTATGAGACAAAGGGTGATGATC GCCCTAGGTCTTGTTTTAAAACCGTCCTTTGTCATTTCTGATGAGCCAACAACTTCTTTGGATGTCATAGTTCAAGCACA AATAATAGAGTTGATGAATAAATTAAGGGATGAATATCAAATGTCTATGTTGCTTATAACACATGATTTAGGTGTAGTTG CTCAACTTGCAGATAAGATTGGAGTAATGTATGCCGGTCATTTGGTGGAAATATCTTCAAAGGAAAATATTTATTACAAT CCCAAGCACCCTTATACAAAAGCTCTTTTAGATTCAATCCCAAATACAGATATCAACGACAAAGATTTAAAATATATTCC TGGAAGTCCTCCAGATTTAGGTAAACCTCCAAAAGGATGCCGATTCGCCCCTCGGTGTGAGTACGCTATGGATATCTGCC ATGAGCAGGAGCCCCCAAGTTTTTTAATCGAAGGATCGGAAGTTAAGTGCTGGCTTTATGAAAATTCTCAAGATTTAAAT AATGTAAATGTAGGTGGTACTAATGACTGA
Upstream 100 bases:
>100_bases CCGGTGTTGCTATAATGACTGTTACACTAGGATTTTCCATGTTCAGCGAAGGGTTGAACGAGATGCTGAATCCAACAATT AGGGAAAGAAGGTAGTAAGA
Downstream 100 bases:
>100_bases AAATACAATCTTAAAAGTTCAAGGTTTGAAAAAATATTTTCCTCTAAAAAGAACGGTGGGGGAAGTTTTAACTAGAACTC CACCAAAATATGTAAGGGCG
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MLEVKNLKVYYKSEEGIIKAVDDVSFKVKDGETLGLVGESGCGKSTLGQAIMKILPLNARLYGEIILNGQNIIKMNEKQM REIRGRDITMIFQDPMTSLNPIMKVKDLFVEIVRAHFPDISKEKAIEMGGGVLKDVGIDPSRMNQYTFQFSGGMRQRVMI ALGLVLKPSFVISDEPTTSLDVIVQAQIIELMNKLRDEYQMSMLLITHDLGVVAQLADKIGVMYAGHLVEISSKENIYYN PKHPYTKALLDSIPNTDINDKDLKYIPGSPPDLGKPPKGCRFAPRCEYAMDICHEQEPPSFLIEGSEVKCWLYENSQDLN NVNVGGTND
Sequences:
>Translated_329_residues MLEVKNLKVYYKSEEGIIKAVDDVSFKVKDGETLGLVGESGCGKSTLGQAIMKILPLNARLYGEIILNGQNIIKMNEKQM REIRGRDITMIFQDPMTSLNPIMKVKDLFVEIVRAHFPDISKEKAIEMGGGVLKDVGIDPSRMNQYTFQFSGGMRQRVMI ALGLVLKPSFVISDEPTTSLDVIVQAQIIELMNKLRDEYQMSMLLITHDLGVVAQLADKIGVMYAGHLVEISSKENIYYN PKHPYTKALLDSIPNTDINDKDLKYIPGSPPDLGKPPKGCRFAPRCEYAMDICHEQEPPSFLIEGSEVKCWLYENSQDLN NVNVGGTND >Mature_329_residues MLEVKNLKVYYKSEEGIIKAVDDVSFKVKDGETLGLVGESGCGKSTLGQAIMKILPLNARLYGEIILNGQNIIKMNEKQM REIRGRDITMIFQDPMTSLNPIMKVKDLFVEIVRAHFPDISKEKAIEMGGGVLKDVGIDPSRMNQYTFQFSGGMRQRVMI ALGLVLKPSFVISDEPTTSLDVIVQAQIIELMNKLRDEYQMSMLLITHDLGVVAQLADKIGVMYAGHLVEISSKENIYYN PKHPYTKALLDSIPNTDINDKDLKYIPGSPPDLGKPPKGCRFAPRCEYAMDICHEQEPPSFLIEGSEVKCWLYENSQDLN NVNVGGTND
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=239, Percent_Identity=30.1255230125523, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=27.8969957081545, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4505771, Length=234, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI9961250, Length=237, Percent_Identity=27.8481012658228, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI42490749, Length=243, Percent_Identity=27.9835390946502, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI11967971, Length=223, Percent_Identity=23.7668161434978, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9665248, Length=221, Percent_Identity=24.4343891402715, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=313, Percent_Identity=44.0894568690096, Blast_Score=288, Evalue=3e-79, Organism=Escherichia coli, GI1789963, Length=317, Percent_Identity=43.5331230283912, Blast_Score=260, Evalue=1e-70, Organism=Escherichia coli, GI1787500, Length=318, Percent_Identity=38.3647798742138, Blast_Score=242, Evalue=2e-65, Organism=Escherichia coli, GI1787759, Length=318, Percent_Identity=37.7358490566038, Blast_Score=230, Evalue=9e-62, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=43.1818181818182, Blast_Score=221, Evalue=6e-59, Organism=Escherichia coli, GI1789962, Length=326, Percent_Identity=37.7300613496933, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=40.9961685823755, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI1787548, Length=307, Percent_Identity=34.5276872964169, Blast_Score=192, Evalue=2e-50, Organism=Escherichia coli, GI1787758, Length=295, Percent_Identity=33.5593220338983, Blast_Score=188, Evalue=3e-49, Organism=Escherichia coli, GI1789890, Length=238, Percent_Identity=36.5546218487395, Blast_Score=141, Evalue=6e-35, Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=36.1904761904762, Blast_Score=140, Evalue=9e-35, Organism=Escherichia coli, GI48994997, Length=262, Percent_Identity=35.4961832061069, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=30.2325581395349, Blast_Score=131, Evalue=7e-32, Organism=Escherichia coli, GI1790162, Length=252, Percent_Identity=29.3650793650794, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1789032, Length=238, Percent_Identity=28.1512605042017, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1786398, Length=259, Percent_Identity=28.1853281853282, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI87081709, Length=254, Percent_Identity=25.5905511811024, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081834, Length=229, Percent_Identity=31.8777292576419, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=29.1304347826087, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=253, Percent_Identity=27.6679841897233, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787029, Length=261, Percent_Identity=27.5862068965517, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789672, Length=259, Percent_Identity=27.7992277992278, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1786872, Length=259, Percent_Identity=31.2741312741313, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786703, Length=233, Percent_Identity=31.3304721030043, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=26.6666666666667, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081791, Length=269, Percent_Identity=28.996282527881, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1786563, Length=226, Percent_Identity=30.9734513274336, Blast_Score=92, Evalue=7e-20, Organism=Escherichia coli, GI1788644, Length=203, Percent_Identity=29.5566502463054, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI87082267, Length=246, Percent_Identity=26.8292682926829, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=27.0833333333333, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788761, Length=242, Percent_Identity=24.7933884297521, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI48995001, Length=213, Percent_Identity=30.9859154929577, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1787105, Length=244, Percent_Identity=27.4590163934426, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1790467, Length=249, Percent_Identity=27.710843373494, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=29.8165137614679, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786803, Length=244, Percent_Identity=25.4098360655738, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1787112, Length=237, Percent_Identity=28.2700421940928, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=25, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=26.4462809917355, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=26.271186440678, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789586, Length=256, Percent_Identity=26.5625, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787792, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789593, Length=231, Percent_Identity=27.7056277056277, Blast_Score=68, Evalue=9e-13, Organism=Escherichia coli, GI1786654, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=24.8803827751196, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=25, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786253, Length=212, Percent_Identity=25.4716981132075, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992290, Length=251, Percent_Identity=28.6852589641434, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI212646699, Length=220, Percent_Identity=28.6363636363636, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193211017, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193211015, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71992285, Length=235, Percent_Identity=28.936170212766, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996809, Length=247, Percent_Identity=26.7206477732794, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193209708, Length=216, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17543740, Length=249, Percent_Identity=28.9156626506024, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565938, Length=268, Percent_Identity=26.865671641791, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569081, Length=250, Percent_Identity=25.2, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI32566680, Length=251, Percent_Identity=23.9043824701195, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193208177, Length=228, Percent_Identity=24.5614035087719, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17567265, Length=230, Percent_Identity=27.8260869565217, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17567243, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=215, Percent_Identity=28.3720930232558, Blast_Score=63, Evalue=8e-11, Organism=Drosophila melanogaster, GI21357907, Length=256, Percent_Identity=23.828125, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574744, Length=213, Percent_Identity=28.6384976525822, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076684, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581617, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24581615, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI161076682, Length=184, Percent_Identity=30.9782608695652, Blast_Score=66, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36808; Mature: 36808
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEVKNLKVYYKSEEGIIKAVDDVSFKVKDGETLGLVGESGCGKSTLGQAIMKILPLNAR CCEEEEEEEEEECCCCCEEEECCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCE LYGEIILNGQNIIKMNEKQMREIRGRDITMIFQDPMTSLNPIMKVKDLFVEIVRAHFPDI EEEEEEECCCCEEEECHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC SKEKAIEMGGGVLKDVGIDPSRMNQYTFQFSGGMRQRVMIALGLVLKPSFVISDEPTTSL CHHHHHHHCCCEEECCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCHH DVIVQAQIIELMNKLRDEYQMSMLLITHDLGVVAQLADKIGVMYAGHLVEISSKENIYYN HHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHEEECEEEEECCCCCEEEC PKHPYTKALLDSIPNTDINDKDLKYIPGSPPDLGKPPKGCRFAPRCEYAMDICHEQEPPS CCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC FLIEGSEVKCWLYENSQDLNNVNVGGTND EEEECCEEEEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MLEVKNLKVYYKSEEGIIKAVDDVSFKVKDGETLGLVGESGCGKSTLGQAIMKILPLNAR CCEEEEEEEEEECCCCCEEEECCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCE LYGEIILNGQNIIKMNEKQMREIRGRDITMIFQDPMTSLNPIMKVKDLFVEIVRAHFPDI EEEEEEECCCCEEEECHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC SKEKAIEMGGGVLKDVGIDPSRMNQYTFQFSGGMRQRVMIALGLVLKPSFVISDEPTTSL CHHHHHHHCCCEEECCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCHH DVIVQAQIIELMNKLRDEYQMSMLLITHDLGVVAQLADKIGVMYAGHLVEISSKENIYYN HHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHEEECEEEEECCCCCEEEC PKHPYTKALLDSIPNTDINDKDLKYIPGSPPDLGKPPKGCRFAPRCEYAMDICHEQEPPS CCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC FLIEGSEVKCWLYENSQDLNNVNVGGTND EEEECCEEEEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]