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The map label for this gene is ygeY [H]

Identifier: 160903164

GI number: 160903164

Start: 1893348

End: 1894550

Strand: Direct

Name: ygeY [H]

Synonym: Pmob_1729

Alternate gene names: 160903164

Gene position: 1893348-1894550 (Clockwise)

Preceding gene: 160903163

Following gene: 160903165

Centisome position: 87.27

GC content: 36.33

Gene sequence:

>1203_bases
ATGAATTACCAACAAATACTATCAAAAGCCAAGGAATACAAAAAAGACATGACCAGATTTCTTAGGGACATGATTGCTAT
TCCAAGTGAAAGTGGAAATGAAAAAGATGTTATTTTAAGAATTAAAGAAGAGATGGAAAAAGTTGGTTTTGACAGAATAG
ATATTGATCCAATGGGGAACATTTTAGGTTACATTGGCCACGGAAAACACTTAATAGCTATGGATGCTCATATAGATACA
GTAGGTATTGGAGATATAAATTTATGGAATTACGATCCTTATAAAGGTTACGAAGACGATGAAATTATCGTTGGGAGAGG
AGCTAGTGATCAAGAAGGTGGAATGGCTTCTATGGTTTACGGAGCTAGGATTATAAAAGATTTAGATTTATTTGACGATT
ATACGCTTCTAATTACTGGAACAGTTCAAGAAGAAGATTGTGAGGGACTTTGTTGGCAATACATAATTGAAGAAGATAAA
ATCAAACCCGAATTTGTCGTTATTACCGAACCAACTTCGTGTAATATATATAGAGGCCAACGTGGGCGGATGGAAATAAA
AGTTTCTACGCATGGTGTTAGTTGCCACGGTTCAGCACCTGAAAGAGGAGACAATGCTATTTATAAAATGGCGGATATTG
TTAAAGAGTTACCAGTACTACATACTTGTTTAAAAAATGATGATTTTTTAGGAAAAGGTAGCTTGACAGTTTCCGAAATT
TTCTTCTCTTCTCCTTCTAGATGTGCGGTTGCAGATGGTTGTTCTATATCCATAGATAGGAGATTGACTTGGGGAGAAAG
TTGGAACGATGCTTTAAAAGAGATTAAAAATTTACCTTCATCCGAGAAACATAACGCTGATGTGGAACTTTACACCTATG
AAAAACCATCCTACACGGGATTAATATATCCAACACAAGCATATTTCCCAGCTTGGGTATTACCAGAAGATCATCCTGCT
TGTAAAACTCTCAAAGAAGCGTATCAAAACTTATTTGAGAAAAAACCGTTGGTAGACAAGTGGACTTTTTCCACCAATGG
TGTTTCCATAATGGGAAGATATGGAATACCTTGTATTGGATTTGGTCCTGGCCATGAAGATCAAGCACATGCTCCCAACG
AAAAAACATGGAAAAGTGAATTGGTGAAGGCCGCTGCAATGTATGCATGCATACCTAAGTTGTATACTCAAAAATACTTG
TAA

Upstream 100 bases:

>100_bases
TAAATAACTTATTAAATAGTTGAACGAGATTTATTTCTATCATAAAAAAAACAGCAATAAGCAATAAAACTATCAGATAA
AAGGGGGTTCATTAAAATAT

Downstream 100 bases:

>100_bases
AAGGAAGGATTACGGTGTTAATCAAAAACGGTATCGTAGTTACTGCCACAAAAACTGAAAAAAAAGACATTAGAATATTG
GACGAAAAGATAAAACAAAT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MNYQQILSKAKEYKKDMTRFLRDMIAIPSESGNEKDVILRIKEEMEKVGFDRIDIDPMGNILGYIGHGKHLIAMDAHIDT
VGIGDINLWNYDPYKGYEDDEIIVGRGASDQEGGMASMVYGARIIKDLDLFDDYTLLITGTVQEEDCEGLCWQYIIEEDK
IKPEFVVITEPTSCNIYRGQRGRMEIKVSTHGVSCHGSAPERGDNAIYKMADIVKELPVLHTCLKNDDFLGKGSLTVSEI
FFSSPSRCAVADGCSISIDRRLTWGESWNDALKEIKNLPSSEKHNADVELYTYEKPSYTGLIYPTQAYFPAWVLPEDHPA
CKTLKEAYQNLFEKKPLVDKWTFSTNGVSIMGRYGIPCIGFGPGHEDQAHAPNEKTWKSELVKAAAMYACIPKLYTQKYL

Sequences:

>Translated_400_residues
MNYQQILSKAKEYKKDMTRFLRDMIAIPSESGNEKDVILRIKEEMEKVGFDRIDIDPMGNILGYIGHGKHLIAMDAHIDT
VGIGDINLWNYDPYKGYEDDEIIVGRGASDQEGGMASMVYGARIIKDLDLFDDYTLLITGTVQEEDCEGLCWQYIIEEDK
IKPEFVVITEPTSCNIYRGQRGRMEIKVSTHGVSCHGSAPERGDNAIYKMADIVKELPVLHTCLKNDDFLGKGSLTVSEI
FFSSPSRCAVADGCSISIDRRLTWGESWNDALKEIKNLPSSEKHNADVELYTYEKPSYTGLIYPTQAYFPAWVLPEDHPA
CKTLKEAYQNLFEKKPLVDKWTFSTNGVSIMGRYGIPCIGFGPGHEDQAHAPNEKTWKSELVKAAAMYACIPKLYTQKYL
>Mature_400_residues
MNYQQILSKAKEYKKDMTRFLRDMIAIPSESGNEKDVILRIKEEMEKVGFDRIDIDPMGNILGYIGHGKHLIAMDAHIDT
VGIGDINLWNYDPYKGYEDDEIIVGRGASDQEGGMASMVYGARIIKDLDLFDDYTLLITGTVQEEDCEGLCWQYIIEEDK
IKPEFVVITEPTSCNIYRGQRGRMEIKVSTHGVSCHGSAPERGDNAIYKMADIVKELPVLHTCLKNDDFLGKGSLTVSEI
FFSSPSRCAVADGCSISIDRRLTWGESWNDALKEIKNLPSSEKHNADVELYTYEKPSYTGLIYPTQAYFPAWVLPEDHPA
CKTLKEAYQNLFEKKPLVDKWTFSTNGVSIMGRYGIPCIGFGPGHEDQAHAPNEKTWKSELVKAAAMYACIPKLYTQKYL

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=390, Percent_Identity=70.7692307692308, Blast_Score=593, Evalue=1e-171,
Organism=Escherichia coli, GI1790395, Length=375, Percent_Identity=25.3333333333333, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788816, Length=387, Percent_Identity=22.4806201550388, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR017706
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 45152; Mature: 45152

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYQQILSKAKEYKKDMTRFLRDMIAIPSESGNEKDVILRIKEEMEKVGFDRIDIDPMGN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHCCCCEECCCCHHH
ILGYIGHGKHLIAMDAHIDTVGIGDINLWNYDPYKGYEDDEIIVGRGASDQEGGMASMVY
HHHHHCCCCEEEEEECCCCEEECCCEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHHHH
GARIIKDLDLFDDYTLLITGTVQEEDCEGLCWQYIIEEDKIKPEFVVITEPTSCNIYRGQ
HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCEEECC
RGRMEIKVSTHGVSCHGSAPERGDNAIYKMADIVKELPVLHTCLKNDDFLGKGSLTVSEI
CCCEEEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
FFSSPSRCAVADGCSISIDRRLTWGESWNDALKEIKNLPSSEKHNADVELYTYEKPSYTG
HHCCCCCEEEECCCEEEECCEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE
LIYPTQAYFPAWVLPEDHPACKTLKEAYQNLFEKKPLVDKWTFSTNGVSIMGRYGIPCIG
EEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCEEE
FGPGHEDQAHAPNEKTWKSELVKAAAMYACIPKLYTQKYL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNYQQILSKAKEYKKDMTRFLRDMIAIPSESGNEKDVILRIKEEMEKVGFDRIDIDPMGN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHCCCCEECCCCHHH
ILGYIGHGKHLIAMDAHIDTVGIGDINLWNYDPYKGYEDDEIIVGRGASDQEGGMASMVY
HHHHHCCCCEEEEEECCCCEEECCCEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHHHH
GARIIKDLDLFDDYTLLITGTVQEEDCEGLCWQYIIEEDKIKPEFVVITEPTSCNIYRGQ
HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCEEECC
RGRMEIKVSTHGVSCHGSAPERGDNAIYKMADIVKELPVLHTCLKNDDFLGKGSLTVSEI
CCCEEEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
FFSSPSRCAVADGCSISIDRRLTWGESWNDALKEIKNLPSSEKHNADVELYTYEKPSYTG
HHCCCCCEEEECCCEEEECCEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEE
LIYPTQAYFPAWVLPEDHPACKTLKEAYQNLFEKKPLVDKWTFSTNGVSIMGRYGIPCIG
EEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCEEE
FGPGHEDQAHAPNEKTWKSELVKAAAMYACIPKLYTQKYL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]