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The map label for this gene is dppC [H]

Identifier: 160903015

GI number: 160903015

Start: 1718561

End: 1719886

Strand: Direct

Name: dppC [H]

Synonym: Pmob_1577

Alternate gene names: 160903015

Gene position: 1718561-1719886 (Clockwise)

Preceding gene: 160903014

Following gene: 160903016

Centisome position: 79.21

GC content: 36.27

Gene sequence:

>1326_bases
GTGAATGAAGAAACAAAAAGGGCTTTAAAGCGTTTTTTTACTAATCCTTCCGCCATTATTGGCTTTTCTATATTAGTTTT
TTTCATAATTGTAGCAATATTTGCACCAGTGATTGCACCTCCTCAATTACCAAAAGAAAGAAACTTGGAAAGGGCCCTTG
AATTAGTAAATGAAGATCCAACAGGGAATAAAGATTCTATTATTCAAGAGTTTCAAAGCTATTGGGAAGATACATATTTT
TTCGCTGAAATGGATTATCAAGATATGTCAAGATTGATGGAAAGTGTTGAAAAGTTTGAAGATGGAGAGATTGAAAAAGA
AGTATTAAAATCTCAAATTGAAGAATTAGTTGATATGTACGTTCTAAATAGGTCCTACTATGAAGATTTTGATGAAGATA
CCAATGGAGTAATTAGAAGGTTGAGAAATGAATATGAAAGTGTTGTAGAAAGATATGAAAGGTCTTTACAACTTTCTGAA
ATGATCAGTGATCTCCAGTCACTCGAAGGACAAGATTTCAAAAATGAAGCTTTAAACGTTTATGAAACCTTAAACAAAGA
TTTTTTGAACTCAATTGATTTTGACCCTTTCATGATCCCCAACGCAGTTTCAACATTAGAACCTATACCACCATCTCCTG
AACATCCCTTTGGGATAGTAAATCAAAAGGATATTTTTTATGGTGTTGTATGGGGAACTAGAACCGCTTTTCAGATAGGG
TTGGTGGTAGTTTTAATTTCAACCGCTGTTGGGCTTTTTATTGGTTCAGTAGCTGCCTATTTTGGTGGTTGGCTTGAAGA
AGTTTTGATGAGAATTACAGATATTTTTATGTCCATACCTTTTATGCTTGCAGCTATGGTTTTAACAACTATTTTAGGTC
TTGGAGTTAGAAATATGATGATTGCTTTGATAATTTTTGGGTGGATGGTTACGGCAAGATTGATCAGAGGGAACATACTT
CAAGCCAAAAACGAGCAATACGTAATGGCTGCAAAAGCTCTTGGGGTAAGAGACGCGGCAATTATAGTTAAACATATCTT
ACCTAATACGATATTTCCAGTTTTGATAAACGCTACCATGAGGATTGGATCGATGGTTATCACTGCCGCAGCTTTGAGTT
TCTTGGGTTTAGGTGCTCCACAAGGATACGCGGATTGGGGATCTATATTATCGTATTCAAGAGACTGGATCATTGGAGGT
ACAAGTCCGGGTCAATACTGGTTCACGATCTTGTATCCTGGTGTGGCTATGATTCTTTTTGTCATGGGGTGGAATTTACT
GGGAGATGCCCTAAGAGATGTCTTTGATCCAAGAATGAGACGATAA

Upstream 100 bases:

>100_bases
TTATTATTTACTTCTTTCATACTTATTGTTGGAAATCTTATAATCGATATATCGTATGCATTTATTGATCCAAGAATCAG
GTTAGGGTGAGGTGAAAATT

Downstream 100 bases:

>100_bases
AGTGAGAGGAGGAAGTTTTTTGAAAGATAATAATAGCGAACCTATACTTCGTGTTAATAATTTGCATGTTCATTTTAAAA
CAGAGGACGGAATAATAAAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MNEETKRALKRFFTNPSAIIGFSILVFFIIVAIFAPVIAPPQLPKERNLERALELVNEDPTGNKDSIIQEFQSYWEDTYF
FAEMDYQDMSRLMESVEKFEDGEIEKEVLKSQIEELVDMYVLNRSYYEDFDEDTNGVIRRLRNEYESVVERYERSLQLSE
MISDLQSLEGQDFKNEALNVYETLNKDFLNSIDFDPFMIPNAVSTLEPIPPSPEHPFGIVNQKDIFYGVVWGTRTAFQIG
LVVVLISTAVGLFIGSVAAYFGGWLEEVLMRITDIFMSIPFMLAAMVLTTILGLGVRNMMIALIIFGWMVTARLIRGNIL
QAKNEQYVMAAKALGVRDAAIIVKHILPNTIFPVLINATMRIGSMVITAAALSFLGLGAPQGYADWGSILSYSRDWIIGG
TSPGQYWFTILYPGVAMILFVMGWNLLGDALRDVFDPRMRR

Sequences:

>Translated_441_residues
MNEETKRALKRFFTNPSAIIGFSILVFFIIVAIFAPVIAPPQLPKERNLERALELVNEDPTGNKDSIIQEFQSYWEDTYF
FAEMDYQDMSRLMESVEKFEDGEIEKEVLKSQIEELVDMYVLNRSYYEDFDEDTNGVIRRLRNEYESVVERYERSLQLSE
MISDLQSLEGQDFKNEALNVYETLNKDFLNSIDFDPFMIPNAVSTLEPIPPSPEHPFGIVNQKDIFYGVVWGTRTAFQIG
LVVVLISTAVGLFIGSVAAYFGGWLEEVLMRITDIFMSIPFMLAAMVLTTILGLGVRNMMIALIIFGWMVTARLIRGNIL
QAKNEQYVMAAKALGVRDAAIIVKHILPNTIFPVLINATMRIGSMVITAAALSFLGLGAPQGYADWGSILSYSRDWIIGG
TSPGQYWFTILYPGVAMILFVMGWNLLGDALRDVFDPRMRR
>Mature_441_residues
MNEETKRALKRFFTNPSAIIGFSILVFFIIVAIFAPVIAPPQLPKERNLERALELVNEDPTGNKDSIIQEFQSYWEDTYF
FAEMDYQDMSRLMESVEKFEDGEIEKEVLKSQIEELVDMYVLNRSYYEDFDEDTNGVIRRLRNEYESVVERYERSLQLSE
MISDLQSLEGQDFKNEALNVYETLNKDFLNSIDFDPFMIPNAVSTLEPIPPSPEHPFGIVNQKDIFYGVVWGTRTAFQIG
LVVVLISTAVGLFIGSVAAYFGGWLEEVLMRITDIFMSIPFMLAAMVLTTILGLGVRNMMIALIIFGWMVTARLIRGNIL
QAKNEQYVMAAKALGVRDAAIIVKHILPNTIFPVLINATMRIGSMVITAAALSFLGLGAPQGYADWGSILSYSRDWIIGG
TSPGQYWFTILYPGVAMILFVMGWNLLGDALRDVFDPRMRR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=232, Percent_Identity=37.9310344827586, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787760, Length=250, Percent_Identity=36.4, Blast_Score=156, Evalue=3e-39,
Organism=Escherichia coli, GI1789889, Length=232, Percent_Identity=31.8965517241379, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788505, Length=232, Percent_Identity=29.3103448275862, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787498, Length=227, Percent_Identity=31.7180616740088, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1789964, Length=219, Percent_Identity=31.5068493150685, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787549, Length=251, Percent_Identity=26.6932270916335, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 50040; Mature: 50040

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEETKRALKRFFTNPSAIIGFSILVFFIIVAIFAPVIAPPQLPKERNLERALELVNEDP
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
TGNKDSIIQEFQSYWEDTYFFAEMDYQDMSRLMESVEKFEDGEIEKEVLKSQIEELVDMY
CCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLNRSYYEDFDEDTNGVIRRLRNEYESVVERYERSLQLSEMISDLQSLEGQDFKNEALNV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
YETLNKDFLNSIDFDPFMIPNAVSTLEPIPPSPEHPFGIVNQKDIFYGVVWGTRTAFQIG
HHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
LVVVLISTAVGLFIGSVAAYFGGWLEEVLMRITDIFMSIPFMLAAMVLTTILGLGVRNMM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALIIFGWMVTARLIRGNILQAKNEQYVMAAKALGVRDAAIIVKHILPNTIFPVLINATM
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RIGSMVITAAALSFLGLGAPQGYADWGSILSYSRDWIIGGTSPGQYWFTILYPGVAMILF
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
VMGWNLLGDALRDVFDPRMRR
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNEETKRALKRFFTNPSAIIGFSILVFFIIVAIFAPVIAPPQLPKERNLERALELVNEDP
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
TGNKDSIIQEFQSYWEDTYFFAEMDYQDMSRLMESVEKFEDGEIEKEVLKSQIEELVDMY
CCCHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLNRSYYEDFDEDTNGVIRRLRNEYESVVERYERSLQLSEMISDLQSLEGQDFKNEALNV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
YETLNKDFLNSIDFDPFMIPNAVSTLEPIPPSPEHPFGIVNQKDIFYGVVWGTRTAFQIG
HHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
LVVVLISTAVGLFIGSVAAYFGGWLEEVLMRITDIFMSIPFMLAAMVLTTILGLGVRNMM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALIIFGWMVTARLIRGNILQAKNEQYVMAAKALGVRDAAIIVKHILPNTIFPVLINATM
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RIGSMVITAAALSFLGLGAPQGYADWGSILSYSRDWIIGGTSPGQYWFTILYPGVAMILF
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
VMGWNLLGDALRDVFDPRMRR
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]