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The map label for this gene is araQ [H]

Identifier: 160902824

GI number: 160902824

Start: 1484657

End: 1486888

Strand: Direct

Name: araQ [H]

Synonym: Pmob_1378

Alternate gene names: 160902824

Gene position: 1484657-1486888 (Clockwise)

Preceding gene: 160902823

Following gene: 160902825

Centisome position: 68.43

GC content: 33.69

Gene sequence:

>2232_bases
TTGAATTATTCAAAGTTTATTAAAACACTTTGGACTTTGATAGTTTACTTATTGTTAGCGGGTGGCGCCATAGTTATGCT
CTTGCCTTTTGCATGGATGATAATGACCTCTTTGAAAACAAGTAGTGAAATCAACATGTGGCCTCCAACATGGACAACAA
AAAATTTTCAGAGTGAATGGGGTTTAAATTTAAAATTAACCCCTTCAAAGCCTTCCCCACGGACAGGCTTAAGTTTAGCT
GAATTTAGAACTTTATCAGCCCAAGAGAGTTACAACCCTTACAAAATGGTCTATGAAATAGACGGGGACTATGTAAGCAG
GGGAAGGGTACAACTCTCTTTTAACGAGATAAATTATACAGATCAAGCAAGTGTCGATTATATGATGTCTGATATCTACG
ATTATATTTCAAATATTGAATTAAGAGAAGATTTATCAAGCTTATTTGCTGTAGAAGATTATTCTCTTGAAACGTTTGAA
AGTATTTATTTTACTCTTTTTTCCCAAGAAGATGGTTATTTTAAACAGACCACTACTATAAGAAGGATACAACAAAGTAT
AAGCAAAGTTCAGAATTTTATAGATATAACGCTCGAAAGAACTATCAACATCTTGCCGTATTTTAGAACGAACCCAAATA
TGACAGAAAGTCAAATAGAAAGTATTACAAGAAGTAAAGAAATATTTTCAGATTATTTGGGAACGATAAAATTGAAAGCC
GACGAATTGAATTCAAAATTGTCTTCCCATCCAGCAGAATTGAGAATAATTAGCCAAAGTGAGGTAGAACAATTAATCAA
TTTACTTGCCGATTTTTTATCGGAGATTCAAACTTTTGAAGATGAAATCCTATCTAACACCAATACTTTGATTCAAAGAA
ATATTTACGAACCCATTATGAAAGATATCAACACTTTAACTTTCTTTATGTATTTTAACGAAAAATATGGTGAGGAACAA
AATATAACATTTGAAGATGTAAACATAATATTTGACGTTCCTACGAAAGAAACAAAGTATCAGAATATCATCGAAGGTAT
CCAGCAAACAGCATATCCAGAGTCATTTAAACAAATTGTGATTTCATTGGCTGACGAGAAAAATATTGAGAATTTGAATC
AAGAAGTCGTTTCATATCTTGAGAACGATTTCGTAAATGATGTAAGTAATTCTTTAATAGATGACCCTAGAAACCTTTCA
ATATACACAAACATTATTAGAACTTTATCGCAGAAACAGGCTAATCTTGAGCAAGCTAAGACGGTACTCTCAGAATCTGA
TTACAATTTTTTAATAGAACACATTCAAGGTAAGGAAAAAGAGTTTGGGAGGATATTGGAAAAAAGGGCAGAATATGATA
AAATATTAAAAGATTTCGATAGGTTTTTCATTGATACGATCTCCAAAGCAACTATTGTAAGCGCACCGGCGTTTGTTGAT
AAAATTTTGTACAAAAACAATTCAAATATTGAATTGTACACAGTAAATGTACCGTCGATCTGGTTCCTTGATGATGTACC
TTCTGGAAAGGTTGAATATTCTTTTAGTCAGGTATTAGGTAATATTTTTCAAAATTATGTGGACGCATGGAACGGAGCTC
CATTTTCTCGGTACTACATAAATACGGTTTTCGTTTCTCTGGTAACCACTGTTTTAGAAATAATATTCGCCTCGATGGCT
GCTTTTGCATTTTCAAAACTTAATTTTTGGGGAAAGGATTTTATTTTTATAACTTTTTTAGCGACTATGATGATACCAGG
CGAGGTTTTGTTAGTACCCAATTATATAACTATAAGTAAATTTTCTTGGATAGACAGTTACTATGCTCTGATCGTTCCGT
GGGTGATTAGTGTTTTTGCTATATTTTTGATCAGGCAGCAGTTTATGACGGTACCCAACGAGTTATGGGACGCAGCTAAG
ATAGACGGATCTTCAAGTTGGCGATTTTTATGGACCGTGATGGTTCCTCTTAGTAGACCTGCGATTTTAACTGGGGCGCT
ACTAAAATTTGTAGGGAGTTGGAACGCCTTTTTATGGGTTTTGATCGTCACTAAAAGTCCTGAAATGAGAACACTTTCAG
TGGGATTACAAAATTTTAGAACCGACGCGGGAGAGATTTACAATCTTTTAATGGCGGCATCCACTTTTACTATGATACCT
ATAGTGATATTGTTTATATTCTTGCAAAGATATTTCATAGAAGGTATCGCAAGAACCGGTTTGAAAGGATAA

Upstream 100 bases:

>100_bases
TGCTTACGTACTTTTTGGGATTATTCTATTGTTTACAATCCTTCAGATGAGAAGTAGCAGAAGTAGAATACATTATGAAT
CCTAAAGGAGGAAATTATAC

Downstream 100 bases:

>100_bases
CATAAGGTTCAGTTGGGAAGTGAGAGCAATTCCATTTATTGAGTTAGATAGTAGTAAAAATAAGAAAAAGCAGGTGCTCG
ATCGTAAAAAACCGAATATT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 743

Protein sequence:

>743_residues
MNYSKFIKTLWTLIVYLLLAGGAIVMLLPFAWMIMTSLKTSSEINMWPPTWTTKNFQSEWGLNLKLTPSKPSPRTGLSLA
EFRTLSAQESYNPYKMVYEIDGDYVSRGRVQLSFNEINYTDQASVDYMMSDIYDYISNIELREDLSSLFAVEDYSLETFE
SIYFTLFSQEDGYFKQTTTIRRIQQSISKVQNFIDITLERTINILPYFRTNPNMTESQIESITRSKEIFSDYLGTIKLKA
DELNSKLSSHPAELRIISQSEVEQLINLLADFLSEIQTFEDEILSNTNTLIQRNIYEPIMKDINTLTFFMYFNEKYGEEQ
NITFEDVNIIFDVPTKETKYQNIIEGIQQTAYPESFKQIVISLADEKNIENLNQEVVSYLENDFVNDVSNSLIDDPRNLS
IYTNIIRTLSQKQANLEQAKTVLSESDYNFLIEHIQGKEKEFGRILEKRAEYDKILKDFDRFFIDTISKATIVSAPAFVD
KILYKNNSNIELYTVNVPSIWFLDDVPSGKVEYSFSQVLGNIFQNYVDAWNGAPFSRYYINTVFVSLVTTVLEIIFASMA
AFAFSKLNFWGKDFIFITFLATMMIPGEVLLVPNYITISKFSWIDSYYALIVPWVISVFAIFLIRQQFMTVPNELWDAAK
IDGSSSWRFLWTVMVPLSRPAILTGALLKFVGSWNAFLWVLIVTKSPEMRTLSVGLQNFRTDAGEIYNLLMAASTFTMIP
IVILFIFLQRYFIEGIARTGLKG

Sequences:

>Translated_743_residues
MNYSKFIKTLWTLIVYLLLAGGAIVMLLPFAWMIMTSLKTSSEINMWPPTWTTKNFQSEWGLNLKLTPSKPSPRTGLSLA
EFRTLSAQESYNPYKMVYEIDGDYVSRGRVQLSFNEINYTDQASVDYMMSDIYDYISNIELREDLSSLFAVEDYSLETFE
SIYFTLFSQEDGYFKQTTTIRRIQQSISKVQNFIDITLERTINILPYFRTNPNMTESQIESITRSKEIFSDYLGTIKLKA
DELNSKLSSHPAELRIISQSEVEQLINLLADFLSEIQTFEDEILSNTNTLIQRNIYEPIMKDINTLTFFMYFNEKYGEEQ
NITFEDVNIIFDVPTKETKYQNIIEGIQQTAYPESFKQIVISLADEKNIENLNQEVVSYLENDFVNDVSNSLIDDPRNLS
IYTNIIRTLSQKQANLEQAKTVLSESDYNFLIEHIQGKEKEFGRILEKRAEYDKILKDFDRFFIDTISKATIVSAPAFVD
KILYKNNSNIELYTVNVPSIWFLDDVPSGKVEYSFSQVLGNIFQNYVDAWNGAPFSRYYINTVFVSLVTTVLEIIFASMA
AFAFSKLNFWGKDFIFITFLATMMIPGEVLLVPNYITISKFSWIDSYYALIVPWVISVFAIFLIRQQFMTVPNELWDAAK
IDGSSSWRFLWTVMVPLSRPAILTGALLKFVGSWNAFLWVLIVTKSPEMRTLSVGLQNFRTDAGEIYNLLMAASTFTMIP
IVILFIFLQRYFIEGIARTGLKG
>Mature_743_residues
MNYSKFIKTLWTLIVYLLLAGGAIVMLLPFAWMIMTSLKTSSEINMWPPTWTTKNFQSEWGLNLKLTPSKPSPRTGLSLA
EFRTLSAQESYNPYKMVYEIDGDYVSRGRVQLSFNEINYTDQASVDYMMSDIYDYISNIELREDLSSLFAVEDYSLETFE
SIYFTLFSQEDGYFKQTTTIRRIQQSISKVQNFIDITLERTINILPYFRTNPNMTESQIESITRSKEIFSDYLGTIKLKA
DELNSKLSSHPAELRIISQSEVEQLINLLADFLSEIQTFEDEILSNTNTLIQRNIYEPIMKDINTLTFFMYFNEKYGEEQ
NITFEDVNIIFDVPTKETKYQNIIEGIQQTAYPESFKQIVISLADEKNIENLNQEVVSYLENDFVNDVSNSLIDDPRNLS
IYTNIIRTLSQKQANLEQAKTVLSESDYNFLIEHIQGKEKEFGRILEKRAEYDKILKDFDRFFIDTISKATIVSAPAFVD
KILYKNNSNIELYTVNVPSIWFLDDVPSGKVEYSFSQVLGNIFQNYVDAWNGAPFSRYYINTVFVSLVTTVLEIIFASMA
AFAFSKLNFWGKDFIFITFLATMMIPGEVLLVPNYITISKFSWIDSYYALIVPWVISVFAIFLIRQQFMTVPNELWDAAK
IDGSSSWRFLWTVMVPLSRPAILTGALLKFVGSWNAFLWVLIVTKSPEMRTLSVGLQNFRTDAGEIYNLLMAASTFTMIP
IVILFIFLQRYFIEGIARTGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=218, Percent_Identity=33.4862385321101, Blast_Score=116, Evalue=7e-27,
Organism=Escherichia coli, GI1787571, Length=224, Percent_Identity=30.8035714285714, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=23.5023041474654, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 85847; Mature: 85847

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSKFIKTLWTLIVYLLLAGGAIVMLLPFAWMIMTSLKTSSEINMWPPTWTTKNFQSEW
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHC
GLNLKLTPSKPSPRTGLSLAEFRTLSAQESYNPYKMVYEIDGDYVSRGRVQLSFNEINYT
CCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCC
DQASVDYMMSDIYDYISNIELREDLSSLFAVEDYSLETFESIYFTLFSQEDGYFKQTTTI
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCHHHHHHH
RRIQQSISKVQNFIDITLERTINILPYFRTNPNMTESQIESITRSKEIFSDYLGTIKLKA
HHHHHHHHHHHHHHHHHHHHHHEECEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEH
DELNSKLSSHPAELRIISQSEVEQLINLLADFLSEIQTFEDEILSNTNTLIQRNIYEPIM
HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KDINTLTFFMYFNEKYGEEQNITFEDVNIIFDVPTKETKYQNIIEGIQQTAYPESFKQIV
HHHHHEEEEEEECHHCCCCCCCEEEECEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHH
ISLADEKNIENLNQEVVSYLENDFVNDVSNSLIDDPRNLSIYTNIIRTLSQKQANLEQAK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
TVLSESDYNFLIEHIQGKEKEFGRILEKRAEYDKILKDFDRFFIDTISKATIVSAPAFVD
HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHH
KILYKNNSNIELYTVNVPSIWFLDDVPSGKVEYSFSQVLGNIFQNYVDAWNGAPFSRYYI
HHHHCCCCCEEEEEECCCEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NTVFVSLVTTVLEIIFASMAAFAFSKLNFWGKDFIFITFLATMMIPGEVLLVPNYITISK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEHH
FSWIDSYYALIVPWVISVFAIFLIRQQFMTVPNELWDAAKIDGSSSWRFLWTVMVPLSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEECCCCC
AILTGALLKFVGSWNAFLWVLIVTKSPEMRTLSVGLQNFRTDAGEIYNLLMAASTFTMIP
HHHHHHHHHHHHCCCEEEEEEEEECCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IVILFIFLQRYFIEGIARTGLKG
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNYSKFIKTLWTLIVYLLLAGGAIVMLLPFAWMIMTSLKTSSEINMWPPTWTTKNFQSEW
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHC
GLNLKLTPSKPSPRTGLSLAEFRTLSAQESYNPYKMVYEIDGDYVSRGRVQLSFNEINYT
CCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCC
DQASVDYMMSDIYDYISNIELREDLSSLFAVEDYSLETFESIYFTLFSQEDGYFKQTTTI
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCHHHHHHH
RRIQQSISKVQNFIDITLERTINILPYFRTNPNMTESQIESITRSKEIFSDYLGTIKLKA
HHHHHHHHHHHHHHHHHHHHHHEECEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEH
DELNSKLSSHPAELRIISQSEVEQLINLLADFLSEIQTFEDEILSNTNTLIQRNIYEPIM
HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
KDINTLTFFMYFNEKYGEEQNITFEDVNIIFDVPTKETKYQNIIEGIQQTAYPESFKQIV
HHHHHEEEEEEECHHCCCCCCCEEEECEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHH
ISLADEKNIENLNQEVVSYLENDFVNDVSNSLIDDPRNLSIYTNIIRTLSQKQANLEQAK
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
TVLSESDYNFLIEHIQGKEKEFGRILEKRAEYDKILKDFDRFFIDTISKATIVSAPAFVD
HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHH
KILYKNNSNIELYTVNVPSIWFLDDVPSGKVEYSFSQVLGNIFQNYVDAWNGAPFSRYYI
HHHHCCCCCEEEEEECCCEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NTVFVSLVTTVLEIIFASMAAFAFSKLNFWGKDFIFITFLATMMIPGEVLLVPNYITISK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEHH
FSWIDSYYALIVPWVISVFAIFLIRQQFMTVPNELWDAAKIDGSSSWRFLWTVMVPLSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEEEECCCCC
AILTGALLKFVGSWNAFLWVLIVTKSPEMRTLSVGLQNFRTDAGEIYNLLMAASTFTMIP
HHHHHHHHHHHHCCCEEEEEEEEECCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IVILFIFLQRYFIEGIARTGLKG
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]