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The map label for this gene is araP [H]

Identifier: 160902823

GI number: 160902823

Start: 1483280

End: 1484641

Strand: Direct

Name: araP [H]

Synonym: Pmob_1377

Alternate gene names: 160902823

Gene position: 1483280-1484641 (Clockwise)

Preceding gene: 160902822

Following gene: 160902824

Centisome position: 68.37

GC content: 32.01

Gene sequence:

>1362_bases
TTGTTAAAAGCGGAATACGCCATCATTTTTTATGTTTTATTGATCGTCTTATCCTTGCTTTTAGTCAGAATGTTTTCGAA
AAGATATTTAAAACCTGTTAAGTACAGGAAAGTTAAAGAAAGCATTTCAGCTTATTTGTATCTATTACCTTCTTTTGTGA
TTCTAGGGATATTTGTTTTTTGGCCTATTTTTTATTCTTTCTATCTGAGTTTTTTTAAGTGGGATTTCCAAAATCAAGGT
AATCCAATTTTCATTGGGTTTCAGAATTATATAGAATTATTTAAGTTAAATCAACCTGTGAATATAACATTCAACGAAGC
ATTTTTCAATACACTTCTAATCTTTATGACCGCTATTTTTATTATTCATTTGATCTTTGACCTAAAAAAGATAAAAACTC
CTAGGCAAAAATATTTAATTGTCTGTATGAGTATATTGGGAATAATTTCTTTGTTAACTATTAATTCAATACAGTATCTT
AATGTAGTGAGCGCCTTAGTTCTCGTTGTGGTATACACGATTTTATTATCTTTACACTTTGCCGATCAAATGTCCAATAA
AATTTTTCTTCGAATAATCACGTTCATCGGATTATGGATAGCCTTTTACTCGTTGGGAGTCCCCGAAATTATAAGGTTTT
TGAGCTTAGCAAAGGAACAGTCGTTGTTCATCAAAGCAATATGGAATACGACTTATTATGTTCTACTTTCCACGCCTATT
ACTATTCTGTTTGCTTTGTTAATAGCCTTATTGTTGAATAGAAAATTATATGGCAAGACTTTTTTTAGAACGGTTTATTT
TATTCCTTTTGTAACAAGTGTAGTGGCAATTTCTCTAGTTTGGCAATGGATTTTCAACGACAATGGTTTATTAAATTATA
TTTTAACTCAAATAGGTTTTTCAAAAACTCCATGGCTTAAAGATCAGAAGTTTACGATTCCTACTGTTGCTATAATTTCT
ATATGGAAAATGGTAGGCTATTACGCGATCATCTTTTTGGCAGGCCTGCAAAATATTGATAAAGCTTACTACGAAGCTGC
TGAAGTTGATGGAGCCACGCCTTTTCAAAAATTTCAGTTTATTACCTTACCTTTATTATCTCCCACAACTTACTTTGTAA
TCATAGTTGCTATGATCGGGGCATTTAAAGTCTTCGATGAGATTTTCATACTCTATGTAGGTATGCCTGGACCTTACAAC
AACAGTGGGATGACAATGGTTTACTATGTGTATGATATGTTCTACGTTCAACAAAGGATGGGAAGAGCTAGTGCTGCTGC
TTACGTACTTTTTGGGATTATTCTATTGTTTACAATCCTTCAGATGAGAAGTAGCAGAAGTAGAATACATTATGAATCCT
AA

Upstream 100 bases:

>100_bases
AATAGAAGAAAAAGCGCCTTTTGAACAAACGTTGAAAAAGTTAGTCGAAATATACCAAAGGTACAACTAGATTTAACTAA
ACAGCGGGAGGCAGAAAATA

Downstream 100 bases:

>100_bases
AGGAGGAAATTATACTTGAATTATTCAAAGTTTATTAAAACACTTTGGACTTTGATAGTTTACTTATTGTTAGCGGGTGG
CGCCATAGTTATGCTCTTGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MLKAEYAIIFYVLLIVLSLLLVRMFSKRYLKPVKYRKVKESISAYLYLLPSFVILGIFVFWPIFYSFYLSFFKWDFQNQG
NPIFIGFQNYIELFKLNQPVNITFNEAFFNTLLIFMTAIFIIHLIFDLKKIKTPRQKYLIVCMSILGIISLLTINSIQYL
NVVSALVLVVVYTILLSLHFADQMSNKIFLRIITFIGLWIAFYSLGVPEIIRFLSLAKEQSLFIKAIWNTTYYVLLSTPI
TILFALLIALLLNRKLYGKTFFRTVYFIPFVTSVVAISLVWQWIFNDNGLLNYILTQIGFSKTPWLKDQKFTIPTVAIIS
IWKMVGYYAIIFLAGLQNIDKAYYEAAEVDGATPFQKFQFITLPLLSPTTYFVIIVAMIGAFKVFDEIFILYVGMPGPYN
NSGMTMVYYVYDMFYVQQRMGRASAAAYVLFGIILLFTILQMRSSRSRIHYES

Sequences:

>Translated_453_residues
MLKAEYAIIFYVLLIVLSLLLVRMFSKRYLKPVKYRKVKESISAYLYLLPSFVILGIFVFWPIFYSFYLSFFKWDFQNQG
NPIFIGFQNYIELFKLNQPVNITFNEAFFNTLLIFMTAIFIIHLIFDLKKIKTPRQKYLIVCMSILGIISLLTINSIQYL
NVVSALVLVVVYTILLSLHFADQMSNKIFLRIITFIGLWIAFYSLGVPEIIRFLSLAKEQSLFIKAIWNTTYYVLLSTPI
TILFALLIALLLNRKLYGKTFFRTVYFIPFVTSVVAISLVWQWIFNDNGLLNYILTQIGFSKTPWLKDQKFTIPTVAIIS
IWKMVGYYAIIFLAGLQNIDKAYYEAAEVDGATPFQKFQFITLPLLSPTTYFVIIVAMIGAFKVFDEIFILYVGMPGPYN
NSGMTMVYYVYDMFYVQQRMGRASAAAYVLFGIILLFTILQMRSSRSRIHYES
>Mature_453_residues
MLKAEYAIIFYVLLIVLSLLLVRMFSKRYLKPVKYRKVKESISAYLYLLPSFVILGIFVFWPIFYSFYLSFFKWDFQNQG
NPIFIGFQNYIELFKLNQPVNITFNEAFFNTLLIFMTAIFIIHLIFDLKKIKTPRQKYLIVCMSILGIISLLTINSIQYL
NVVSALVLVVVYTILLSLHFADQMSNKIFLRIITFIGLWIAFYSLGVPEIIRFLSLAKEQSLFIKAIWNTTYYVLLSTPI
TILFALLIALLLNRKLYGKTFFRTVYFIPFVTSVVAISLVWQWIFNDNGLLNYILTQIGFSKTPWLKDQKFTIPTVAIIS
IWKMVGYYAIIFLAGLQNIDKAYYEAAEVDGATPFQKFQFITLPLLSPTTYFVIIVAMIGAFKVFDEIFILYVGMPGPYN
NSGMTMVYYVYDMFYVQQRMGRASAAAYVLFGIILLFTILQMRSSRSRIHYES

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=250, Percent_Identity=27.2, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789861, Length=237, Percent_Identity=26.1603375527426, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790465, Length=233, Percent_Identity=28.3261802575107, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 52733; Mature: 52733

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAEYAIIFYVLLIVLSLLLVRMFSKRYLKPVKYRKVKESISAYLYLLPSFVILGIFVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WPIFYSFYLSFFKWDFQNQGNPIFIGFQNYIELFKLNQPVNITFNEAFFNTLLIFMTAIF
HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
IIHLIFDLKKIKTPRQKYLIVCMSILGIISLLTINSIQYLNVVSALVLVVVYTILLSLHF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQMSNKIFLRIITFIGLWIAFYSLGVPEIIRFLSLAKEQSLFIKAIWNTTYYVLLSTPI
HHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH
TILFALLIALLLNRKLYGKTFFRTVYFIPFVTSVVAISLVWQWIFNDNGLLNYILTQIGF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
SKTPWLKDQKFTIPTVAIISIWKMVGYYAIIFLAGLQNIDKAYYEAAEVDGATPFQKFQF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHE
ITLPLLSPTTYFVIIVAMIGAFKVFDEIFILYVGMPGPYNNSGMTMVYYVYDMFYVQQRM
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHH
GRASAAAYVLFGIILLFTILQMRSSRSRIHYES
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLKAEYAIIFYVLLIVLSLLLVRMFSKRYLKPVKYRKVKESISAYLYLLPSFVILGIFVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WPIFYSFYLSFFKWDFQNQGNPIFIGFQNYIELFKLNQPVNITFNEAFFNTLLIFMTAIF
HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
IIHLIFDLKKIKTPRQKYLIVCMSILGIISLLTINSIQYLNVVSALVLVVVYTILLSLHF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQMSNKIFLRIITFIGLWIAFYSLGVPEIIRFLSLAKEQSLFIKAIWNTTYYVLLSTPI
HHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH
TILFALLIALLLNRKLYGKTFFRTVYFIPFVTSVVAISLVWQWIFNDNGLLNYILTQIGF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
SKTPWLKDQKFTIPTVAIISIWKMVGYYAIIFLAGLQNIDKAYYEAAEVDGATPFQKFQF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHE
ITLPLLSPTTYFVIIVAMIGAFKVFDEIFILYVGMPGPYNNSGMTMVYYVYDMFYVQQRM
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHH
GRASAAAYVLFGIILLFTILQMRSSRSRIHYES
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]