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The map label for this gene is rnfD [H]

Identifier: 160902087

GI number: 160902087

Start: 663787

End: 664767

Strand: Direct

Name: rnfD [H]

Synonym: Pmob_0611

Alternate gene names: 160902087

Gene position: 663787-664767 (Clockwise)

Preceding gene: 160902086

Following gene: 160902088

Centisome position: 30.6

GC content: 37.21

Gene sequence:

>981_bases
TTGAATCTTAGCACTGAAGCGGCTCCCCATTTTAGAACTACCAATACTACTAGAAAAATTATGATCGATGTTTTGATATC
ATTGATACCTGCGGTTATTGCTTCAACGTGGATCTTTGGTTTTCGAGCACTTTTTATTATGTTATTTTCTATGGTTTTTG
CAGAAATGTTGGATTTTTCGATCGTTCGTTTCATAAGAAAGCAAAAAGATCACATCCCTGATTTTTCCGCTTCTGTTACA
GGGTTACTCTTAGGTATGAACCTTTCTTTAGCTGTTAACTGGTGGCAAATTATGTTAGGAGTGGTCATTGCGATAATTTT
AGCGAAACAAGTATTTGGGGGGTTAGGTCAAAACTTTTTTAACCCTGCTTTAGTTGGAAGGGCTTTTATGTTGATATCTT
TCCCTACAGCTATGACCACCTGGTATGTACCTTTTTATTACCAGAATCCTGATATTGTTACTTCTGCCTCCGTACTGGGA
ATAATTTCTGAAGAAGGAATGAGCACAGTACTCCAAAATTATACTTACTGGGATATGTTCATCGGAACAATTCCCGGTTC
TATCGGAGAAGTTAGCGCTTTAGCTTTAATTATTGGTTTCATATACTTAGTCATTAAAGGTAGAATAAAATTGATGATCC
CTGTATCCTATATAGGAACGGTTTTAATTTTTAGCTCTGTTTTTTACATGGTTGATCCTACCAAATTTGGAACTCCCTTG
TTCCATCTTTTAGCAGGTGGCTTAATATTAGGTGCTTTGTTCATGGCAACGGATATGGTTACTTCTCCAATGACCAAAAT
GGGCCAGCTCGTTTTTGGTGTGGGAGCTGGAATTTTAACCATGATCATAAGATTTTTTGGTAGTTACCCCGAAGGTGTCT
CCTTTTCAATACTTATCATGAACGCCTTTGTCCCTTTGATTGATGATTGGCTAAAACCAAAAATTTATGGAACAACCAAA
GGGGAGATAAAACATGCGTGA

Upstream 100 bases:

>100_bases
GGTGCTTGTTCTTACATTTGTCCATCAAATATAGATCTAGTTAAAACGTTCAAGACAACAAAAAAGGTTATAAAAGCCAT
TCAAAAAAGGAGGGTTTGAG

Downstream 100 bases:

>100_bases
ATATATAAAAACAGGTTTAATCTTAACCGCTTTTATGGTCGCTGCCGGTTTTTTAGTATCTGTTGTTTACAATTTTGTCA
ATCCGATGATAGTACAATCC

Product: RnfABCDGE type electron transport complex subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNLSTEAAPHFRTTNTTRKIMIDVLISLIPAVIASTWIFGFRALFIMLFSMVFAEMLDFSIVRFIRKQKDHIPDFSASVT
GLLLGMNLSLAVNWWQIMLGVVIAIILAKQVFGGLGQNFFNPALVGRAFMLISFPTAMTTWYVPFYYQNPDIVTSASVLG
IISEEGMSTVLQNYTYWDMFIGTIPGSIGEVSALALIIGFIYLVIKGRIKLMIPVSYIGTVLIFSSVFYMVDPTKFGTPL
FHLLAGGLILGALFMATDMVTSPMTKMGQLVFGVGAGILTMIIRFFGSYPEGVSFSILIMNAFVPLIDDWLKPKIYGTTK
GEIKHA

Sequences:

>Translated_326_residues
MNLSTEAAPHFRTTNTTRKIMIDVLISLIPAVIASTWIFGFRALFIMLFSMVFAEMLDFSIVRFIRKQKDHIPDFSASVT
GLLLGMNLSLAVNWWQIMLGVVIAIILAKQVFGGLGQNFFNPALVGRAFMLISFPTAMTTWYVPFYYQNPDIVTSASVLG
IISEEGMSTVLQNYTYWDMFIGTIPGSIGEVSALALIIGFIYLVIKGRIKLMIPVSYIGTVLIFSSVFYMVDPTKFGTPL
FHLLAGGLILGALFMATDMVTSPMTKMGQLVFGVGAGILTMIIRFFGSYPEGVSFSILIMNAFVPLIDDWLKPKIYGTTK
GEIKHA
>Mature_326_residues
MNLSTEAAPHFRTTNTTRKIMIDVLISLIPAVIASTWIFGFRALFIMLFSMVFAEMLDFSIVRFIRKQKDHIPDFSASVT
GLLLGMNLSLAVNWWQIMLGVVIAIILAKQVFGGLGQNFFNPALVGRAFMLISFPTAMTTWYVPFYYQNPDIVTSASVLG
IISEEGMSTVLQNYTYWDMFIGTIPGSIGEVSALALIIGFIYLVIKGRIKLMIPVSYIGTVLIFSSVFYMVDPTKFGTPL
FHLLAGGLILGALFMATDMVTSPMTKMGQLVFGVGAGILTMIIRFFGSYPEGVSFSILIMNAFVPLIDDWLKPKIYGTTK
GEIKHA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=347, Percent_Identity=33.7175792507205, Blast_Score=193, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 36034; Mature: 36034

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSTEAAPHFRTTNTTRKIMIDVLISLIPAVIASTWIFGFRALFIMLFSMVFAEMLDFS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVRFIRKQKDHIPDFSASVTGLLLGMNLSLAVNWWQIMLGVVIAIILAKQVFGGLGQNFF
HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
NPALVGRAFMLISFPTAMTTWYVPFYYQNPDIVTSASVLGIISEEGMSTVLQNYTYWDMF
CHHHHHHHHHHHCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IGTIPGSIGEVSALALIIGFIYLVIKGRIKLMIPVSYIGTVLIFSSVFYMVDPTKFGTPL
HHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHH
FHLLAGGLILGALFMATDMVTSPMTKMGQLVFGVGAGILTMIIRFFGSYPEGVSFSILIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHH
NAFVPLIDDWLKPKIYGTTKGEIKHA
HHHHHHHHHHHCCCEECCCCCCCCCC
>Mature Secondary Structure
MNLSTEAAPHFRTTNTTRKIMIDVLISLIPAVIASTWIFGFRALFIMLFSMVFAEMLDFS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVRFIRKQKDHIPDFSASVTGLLLGMNLSLAVNWWQIMLGVVIAIILAKQVFGGLGQNFF
HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
NPALVGRAFMLISFPTAMTTWYVPFYYQNPDIVTSASVLGIISEEGMSTVLQNYTYWDMF
CHHHHHHHHHHHCCCHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IGTIPGSIGEVSALALIIGFIYLVIKGRIKLMIPVSYIGTVLIFSSVFYMVDPTKFGTPL
HHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHH
FHLLAGGLILGALFMATDMVTSPMTKMGQLVFGVGAGILTMIIRFFGSYPEGVSFSILIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHH
NAFVPLIDDWLKPKIYGTTKGEIKHA
HHHHHHHHHHHCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA