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The map label for this gene is rnfC [H]

Identifier: 160902086

GI number: 160902086

Start: 662463

End: 663785

Strand: Direct

Name: rnfC [H]

Synonym: Pmob_0610

Alternate gene names: 160902086

Gene position: 662463-663785 (Clockwise)

Preceding gene: 160902084

Following gene: 160902087

Centisome position: 30.53

GC content: 35.15

Gene sequence:

>1323_bases
GTGCCAACATTAACTTTTAAAGGTGGTGTACATCCGCCTCAGAAGAAGCATTTTACAAAGGACAAACCTTTTGAAAAGTT
ACCTTTGCCCGATTTTGTATACCTATTCACAACTAACCATATAGGAGCTCCTGCAAAGCCAATCGTAAAAGAAGGCGATC
AGGTAAAAACAGGTCAATTAATAGCAGAGGCTGCAGGCAATATTTCAGCAAACATACATGCTTCTGTTACAGGGGAAGTT
GTTGGTATAGAATCATTTATAAATACCTCCACAGGAAGAAAGGATAACGCAATTGTAATAAAAAGAACTTCAGAAGATAT
TTGGGAGTATATTGAACACGATGAAAACTTTAAGAAGTTTTCAAAGGAAGAATTAATTAACATTGTTAAAAAAGCCGGTA
TAGTGGGATTAGGTGGTGCTATGTTCCCATCTCATGTAAAATTAAGTATACCCGCTGGCAAAAAAGTCGATTACTTAATA
ATCAATGGAGCAGAATGTGAACCTTACATAACTGTCGATGATATGATGATGAGAACATACACAGAAGAAATCATTAAAGG
AATAAAAATAATAGAATATATAGTTAATCCGGGAAAAATTTATGTGGGCATCGAAGAAAACAAACCTGAAGCAATAAAAG
CCATGAAAAACGCTTTAAAAAATGAAAATATCGAAGTTGCAATTCTAAAAACAAAATATCCTCAAGGTGCAGAAAAACAA
TTAATAAAATCTATCACAAAAAGGGAAGTCCCTTCAGGAGGATTACCTATTGACGCTGGGGCTTTAGTTTTTAACATTTC
CACTACCTATGCAATTTATGATGCAGTAATCAATGGGAAACCCTTAGTTGAACGTGGTATCACTTTGAGTGGGGGTGTAA
AAAAACCTGGTAACTATTGGTTCCGAATTGGAACTAAGGTTTCAGACCTTTTAAATCAAGTAGGACTCGTTGAAGAGGAA
AAAATCGACAGAATAATCTATGGTGGACCAATGACAGGATTACCTTTACCAAATATTGATTTACCGACTTTCAAGGGAAA
CAATGCGATCACCGTATTAACAAAAGAAGAGATACCACAAAAGCATGAATATCCATGTATTAGATGTGCTTCTTGTGTTA
AAGCATGCCCCATAGGACTTCAACCTTACTACCTAAAAAAACTTGCTGATGCTAGGAAAAACGACATCGCACAAGAAAAT
GGAATTATGGATTGTATAGAATGTGGTGCTTGTTCTTACATTTGTCCATCAAATATAGATCTAGTTAAAACGTTCAAGAC
AACAAAAAAGGTTATAAAAGCCATTCAAAAAAGGAGGGTTTGA

Upstream 100 bases:

>100_bases
AACCGCTTTTGAACCCTTTAAAAAAGTTATAGAAGATTATTTAAATTTTATATAGGCTTTCAATTCTTAGTTTCTTAAAA
AACAAAAAGGAGGTTTCTTT

Downstream 100 bases:

>100_bases
GTTGAATCTTAGCACTGAAGCGGCTCCCCATTTTAGAACTACCAATACTACTAGAAAAATTATGATCGATGTTTTGATAT
CATTGATACCTGCGGTTATT

Product: RnfABCDGE type electron transport complex subunit C

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MPTLTFKGGVHPPQKKHFTKDKPFEKLPLPDFVYLFTTNHIGAPAKPIVKEGDQVKTGQLIAEAAGNISANIHASVTGEV
VGIESFINTSTGRKDNAIVIKRTSEDIWEYIEHDENFKKFSKEELINIVKKAGIVGLGGAMFPSHVKLSIPAGKKVDYLI
INGAECEPYITVDDMMMRTYTEEIIKGIKIIEYIVNPGKIYVGIEENKPEAIKAMKNALKNENIEVAILKTKYPQGAEKQ
LIKSITKREVPSGGLPIDAGALVFNISTTYAIYDAVINGKPLVERGITLSGGVKKPGNYWFRIGTKVSDLLNQVGLVEEE
KIDRIIYGGPMTGLPLPNIDLPTFKGNNAITVLTKEEIPQKHEYPCIRCASCVKACPIGLQPYYLKKLADARKNDIAQEN
GIMDCIECGACSYICPSNIDLVKTFKTTKKVIKAIQKRRV

Sequences:

>Translated_440_residues
MPTLTFKGGVHPPQKKHFTKDKPFEKLPLPDFVYLFTTNHIGAPAKPIVKEGDQVKTGQLIAEAAGNISANIHASVTGEV
VGIESFINTSTGRKDNAIVIKRTSEDIWEYIEHDENFKKFSKEELINIVKKAGIVGLGGAMFPSHVKLSIPAGKKVDYLI
INGAECEPYITVDDMMMRTYTEEIIKGIKIIEYIVNPGKIYVGIEENKPEAIKAMKNALKNENIEVAILKTKYPQGAEKQ
LIKSITKREVPSGGLPIDAGALVFNISTTYAIYDAVINGKPLVERGITLSGGVKKPGNYWFRIGTKVSDLLNQVGLVEEE
KIDRIIYGGPMTGLPLPNIDLPTFKGNNAITVLTKEEIPQKHEYPCIRCASCVKACPIGLQPYYLKKLADARKNDIAQEN
GIMDCIECGACSYICPSNIDLVKTFKTTKKVIKAIQKRRV
>Mature_439_residues
PTLTFKGGVHPPQKKHFTKDKPFEKLPLPDFVYLFTTNHIGAPAKPIVKEGDQVKTGQLIAEAAGNISANIHASVTGEVV
GIESFINTSTGRKDNAIVIKRTSEDIWEYIEHDENFKKFSKEELINIVKKAGIVGLGGAMFPSHVKLSIPAGKKVDYLII
NGAECEPYITVDDMMMRTYTEEIIKGIKIIEYIVNPGKIYVGIEENKPEAIKAMKNALKNENIEVAILKTKYPQGAEKQL
IKSITKREVPSGGLPIDAGALVFNISTTYAIYDAVINGKPLVERGITLSGGVKKPGNYWFRIGTKVSDLLNQVGLVEEEK
IDRIIYGGPMTGLPLPNIDLPTFKGNNAITVLTKEEIPQKHEYPCIRCASCVKACPIGLQPYYLKKLADARKNDIAQENG
IMDCIECGACSYICPSNIDLVKTFKTTKKVIKAIQKRRV

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=437, Percent_Identity=39.1304347826087, Blast_Score=326, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 48534; Mature: 48403

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLTFKGGVHPPQKKHFTKDKPFEKLPLPDFVYLFTTNHIGAPAKPIVKEGDQVKTGQL
CCCEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHH
IAEAAGNISANIHASVTGEVVGIESFINTSTGRKDNAIVIKRTSEDIWEYIEHDENFKKF
HHHHCCCCCEEEEEEECCEEEEHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCHHHHHH
SKEELINIVKKAGIVGLGGAMFPSHVKLSIPAGKKVDYLIINGAECEPYITVDDMMMRTY
HHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCEEEEEEECCCCCCEEEHHHHHHHHH
TEEIIKGIKIIEYIVNPGKIYVGIEENKPEAIKAMKNALKNENIEVAILKTKYPQGAEKQ
HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
LIKSITKREVPSGGLPIDAGALVFNISTTYAIYDAVINGKPLVERGITLSGGVKKPGNYW
HHHHHHHHCCCCCCCCCCCCEEEEEECHHHEEEHHHCCCCCHHHCCCEECCCCCCCCCEE
FRIGTKVSDLLNQVGLVEEEKIDRIIYGGPMTGLPLPNIDLPTFKGNNAITVLTKEEIPQ
EEECCHHHHHHHHHCCCCHHHCCEEEECCCCCCCCCCCCCCCEECCCCEEEEEEHHHCCC
KHEYPCIRCASCVKACPIGLQPYYLKKLADARKNDIAQENGIMDCIECGACSYICPSNID
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCH
LVKTFKTTKKVIKAIQKRRV
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTLTFKGGVHPPQKKHFTKDKPFEKLPLPDFVYLFTTNHIGAPAKPIVKEGDQVKTGQL
CCEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHH
IAEAAGNISANIHASVTGEVVGIESFINTSTGRKDNAIVIKRTSEDIWEYIEHDENFKKF
HHHHCCCCCEEEEEEECCEEEEHHHHHCCCCCCCCCEEEEEECCHHHHHHHHCCHHHHHH
SKEELINIVKKAGIVGLGGAMFPSHVKLSIPAGKKVDYLIINGAECEPYITVDDMMMRTY
HHHHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCEEEEEEECCCCCCEEEHHHHHHHHH
TEEIIKGIKIIEYIVNPGKIYVGIEENKPEAIKAMKNALKNENIEVAILKTKYPQGAEKQ
HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHH
LIKSITKREVPSGGLPIDAGALVFNISTTYAIYDAVINGKPLVERGITLSGGVKKPGNYW
HHHHHHHHCCCCCCCCCCCCEEEEEECHHHEEEHHHCCCCCHHHCCCEECCCCCCCCCEE
FRIGTKVSDLLNQVGLVEEEKIDRIIYGGPMTGLPLPNIDLPTFKGNNAITVLTKEEIPQ
EEECCHHHHHHHHHCCCCHHHCCEEEECCCCCCCCCCCCCCCEECCCCEEEEEEHHHCCC
KHEYPCIRCASCVKACPIGLQPYYLKKLADARKNDIAQENGIMDCIECGACSYICPSNID
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCH
LVKTFKTTKKVIKAIQKRRV
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]