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The map label for this gene is rpiR [C]

Identifier: 160901997

GI number: 160901997

Start: 567123

End: 567974

Strand: Direct

Name: rpiR [C]

Synonym: Pmob_0521

Alternate gene names: 160901997

Gene position: 567123-567974 (Clockwise)

Preceding gene: 160901996

Following gene: 160901998

Centisome position: 26.14

GC content: 35.56

Gene sequence:

>852_bases
ATGAGTAAAATTCAAGCTTTTCTTAATTCTAGGATGCCTACTTTCACTAAATCTGAAAAGAAAGTAGCGGAGTATATATT
AAATAGTAAAAAAGAGGACATAACAAGGATTACCATAACTGAATTAGCTACAAAATGCGGAACAAGCGAGGCTACAATTG
CTCGATTCGTTAAAAAAGCAGGTTTTGAAACTTTTCAAGATTTCAAACTTACGTTAGCCTTGGATAATAATGAAGATATA
TTTGAAGAAGAAAAAGATATAACCATCTTCAAAAATGACTCTCCTCAAGAAATACTCAGAAAGGTAAAATTGGGTTCTCT
TAAATCGATTGAGAGCACAACTTCAATACTAGACATAAACAACTTTTTACAAGCTGCAAATTTCATTAGATCTGCTAAAA
GAATAGAGATTTACGGGGTAGGGTCCTCGTCAGCAGTTGCCAAAATATTACAATATAAGTTAACAAGGCTAGGCTTCCCA
TCTTACGCATTGGAGGACCCTCACATGCAAGCTATCTCCGCAGCTACTTTGAACTTTGGAGATTTAGCAATTGGAATAAG
CCAAAGTGGATCCACTAAAGACACAGTAGACTCGTTAAATGTTGCTAAAAAGCATGGGGCAACAACAATTAGTTTGACTG
AACATGCGAATTCTCCTATTACAAAATATTCTGACGTGGTATTAGAAATATTCTCTGGTGAAAACCCTGTAAAAACTAGC
GCAGGGAGATCTATCCTGGTTCAAATTTTTGCGGTGGAGATCTTGTCTGGCTTGTTGTATTCAATAGAATATGAAAAGGC
TTTAACTACAGGAAAAGACACTGCAAGAGCAGTCGTTAATAAATTATACTGA

Upstream 100 bases:

>100_bases
GAAATGAAAGTGGCGAATTTATTGAATTTAGTCAATTAGGTGAATTTGCAGGCGCAAGGGGATCGGCAATACTTTCATTT
CAAAAAGGAGAAATCTAAAA

Downstream 100 bases:

>100_bases
GGTGGTTGTAGTGAAATATCGTAAACAAGTAACAATTGTCGGCGGAGGGATCGCAGGGTTCCATGCAGCGATAGCAGCTT
CAAGAAGTGGCCTAAAAACA

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSKIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFETFQDFKLTLALDNNEDI
FEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNFLQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFP
SYALEDPHMQAISAATLNFGDLAIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTS
AGRSILVQIFAVEILSGLLYSIEYEKALTTGKDTARAVVNKLY

Sequences:

>Translated_283_residues
MSKIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFETFQDFKLTLALDNNEDI
FEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNFLQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFP
SYALEDPHMQAISAATLNFGDLAIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTS
AGRSILVQIFAVEILSGLLYSIEYEKALTTGKDTARAVVNKLY
>Mature_282_residues
SKIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKAGFETFQDFKLTLALDNNEDIF
EEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDINNFLQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPS
YALEDPHMQAISAATLNFGDLAIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTSA
GRSILVQIFAVEILSGLLYSIEYEKALTTGKDTARAVVNKLY

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=259, Percent_Identity=27.4131274131274, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788767, Length=234, Percent_Identity=29.4871794871795, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788159, Length=258, Percent_Identity=28.2945736434109, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082130, Length=207, Percent_Identity=27.0531400966184, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31127; Mature: 30996

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKA
CHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GFETFQDFKLTLALDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDIN
CCHHHCCEEEEEEECCCCHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHH
NFLQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFG
HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
DLAIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTS
CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
AGRSILVQIFAVEILSGLLYSIEYEKALTTGKDTARAVVNKLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
SKIQAFLNSRMPTFTKSEKKVAEYILNSKKEDITRITITELATKCGTSEATIARFVKKA
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GFETFQDFKLTLALDNNEDIFEEEKDITIFKNDSPQEILRKVKLGSLKSIESTTSILDIN
CCHHHCCEEEEEEECCCCHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHH
NFLQAANFIRSAKRIEIYGVGSSSAVAKILQYKLTRLGFPSYALEDPHMQAISAATLNFG
HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
DLAIGISQSGSTKDTVDSLNVAKKHGATTISLTEHANSPITKYSDVVLEIFSGENPVKTS
CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC
AGRSILVQIFAVEILSGLLYSIEYEKALTTGKDTARAVVNKLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]