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The map label for this gene is dppB [C]

Identifier: 160901967

GI number: 160901967

Start: 530680

End: 531690

Strand: Direct

Name: dppB [C]

Synonym: Pmob_0489

Alternate gene names: 160901967

Gene position: 530680-531690 (Clockwise)

Preceding gene: 160901966

Following gene: 160901968

Centisome position: 24.46

GC content: 36.89

Gene sequence:

>1011_bases
GTGAAAGGATTTACGAGGTATTTTTTTCAAAAGCTTTTTTGGTATCTAATAGCTTTTTTCTTGGCTTTATTTTTGAATTT
TTTCTTACCAAGACTCATTCCAGGAGATCCTATTTCAGTTATAGTAAGTAAAATGATGTCTGGAACCGTAGCAAGTGAGA
CGCAGGAAAGGGTTTATCAATCTTTTGTCGAAGAGTTTGGATTGGATAAACCTTTACCTATCCAGTTTTTCAACTACATA
GGAAATGTTTTTAGAGGTGATTTAGGAACGTCGTTCAGTTTGTACCCCCTTTCTGTTAATGAAGTTTTGGGAAACGCTAT
TGTATGGACTATTTCTTTACAATTTCCGGCAATAATTGTAGGTTGGATATTAGGAAACTTACTGGGAGCCGCTGCTGCTT
ACAGAAAAGGGGTTTTCGACAAAACTATTTTTCCAGTGGCACTATTCGTTAATTCTATCCCTTATTATGCTTTGGCAATC
ATATTACTATACTTTTTTGGAGTTTACCTGGGATGGTTCCCAATTGGCGGTGGTTACAGCAGAACATTGCTCCCTTCTTG
GAGTTGGGCTTTTGTAATTGATGTCTTACACCATTACTTTTTACCCTTTATTTCGATTGTTTTAGTAACAATAGGGGGAC
AAGCCATAGGTATGAGAGAGATGTCAATATATGAATTAAATACAGATTATGTTACCTACAGTAAGATGTTAGGTATCAAA
GATAAGAAGATTCAAAGCTATGTCTTCAAAAATGCAGTTCTTCCTCAAATAACAGGACTTGCAATAAGTTTAGGTACAAT
GGTAGGGGGAGCTCTGATCACTGAGATAGTCTTTGGATACCCCGGAGTGGGAACGTGGCTATTCAACGGAATAAGACAGC
TAGATTATCCGATGATCCAAGGTTCAACCCTTATAATAGCGATGATGGTTTTAATTGCTAATTTTATTTTGGATATGGTC
TATGGACTAATAGATCCTAGAATTAAAGCTGCGCAAACGGAGGAGGGTTAA

Upstream 100 bases:

>100_bases
AAATAAAGTAATTTATTATCCGTCGATTAAGCCAAGAGTTCGTGGAGGAAGTTTCAGCCTCCATGAACTCTTTTAAATAT
ACCTTCGAGAGGTGAAATAT

Downstream 100 bases:

>100_bases
TATGAATACAATAAAATTACTTTTGAAATCTCCAAAATTTTTAATAGGATTTGGCCTATTTATGTTTTTATTCTTAACTG
CCTTCATATACCCTGCTGTT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKGFTRYFFQKLFWYLIAFFLALFLNFFLPRLIPGDPISVIVSKMMSGTVASETQERVYQSFVEEFGLDKPLPIQFFNYI
GNVFRGDLGTSFSLYPLSVNEVLGNAIVWTISLQFPAIIVGWILGNLLGAAAAYRKGVFDKTIFPVALFVNSIPYYALAI
ILLYFFGVYLGWFPIGGGYSRTLLPSWSWAFVIDVLHHYFLPFISIVLVTIGGQAIGMREMSIYELNTDYVTYSKMLGIK
DKKIQSYVFKNAVLPQITGLAISLGTMVGGALITEIVFGYPGVGTWLFNGIRQLDYPMIQGSTLIIAMMVLIANFILDMV
YGLIDPRIKAAQTEEG

Sequences:

>Translated_336_residues
MKGFTRYFFQKLFWYLIAFFLALFLNFFLPRLIPGDPISVIVSKMMSGTVASETQERVYQSFVEEFGLDKPLPIQFFNYI
GNVFRGDLGTSFSLYPLSVNEVLGNAIVWTISLQFPAIIVGWILGNLLGAAAAYRKGVFDKTIFPVALFVNSIPYYALAI
ILLYFFGVYLGWFPIGGGYSRTLLPSWSWAFVIDVLHHYFLPFISIVLVTIGGQAIGMREMSIYELNTDYVTYSKMLGIK
DKKIQSYVFKNAVLPQITGLAISLGTMVGGALITEIVFGYPGVGTWLFNGIRQLDYPMIQGSTLIIAMMVLIANFILDMV
YGLIDPRIKAAQTEEG
>Mature_336_residues
MKGFTRYFFQKLFWYLIAFFLALFLNFFLPRLIPGDPISVIVSKMMSGTVASETQERVYQSFVEEFGLDKPLPIQFFNYI
GNVFRGDLGTSFSLYPLSVNEVLGNAIVWTISLQFPAIIVGWILGNLLGAAAAYRKGVFDKTIFPVALFVNSIPYYALAI
ILLYFFGVYLGWFPIGGGYSRTLLPSWSWAFVIDVLHHYFLPFISIVLVTIGGQAIGMREMSIYELNTDYVTYSKMLGIK
DKKIQSYVFKNAVLPQITGLAISLGTMVGGALITEIVFGYPGVGTWLFNGIRQLDYPMIQGSTLIIAMMVLIANFILDMV
YGLIDPRIKAAQTEEG

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=347, Percent_Identity=29.3948126801153, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1787053, Length=326, Percent_Identity=26.9938650306748, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789888, Length=329, Percent_Identity=27.6595744680851, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=27.893175074184, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787497, Length=326, Percent_Identity=24.2331288343558, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787550, Length=227, Percent_Identity=30.3964757709251, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=24.0331491712707, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37667; Mature: 37667

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGFTRYFFQKLFWYLIAFFLALFLNFFLPRLIPGDPISVIVSKMMSGTVASETQERVYQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
SFVEEFGLDKPLPIQFFNYIGNVFRGDLGTSFSLYPLSVNEVLGNAIVWTISLQFPAIIV
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCEEEEEEECHHHHHHH
GWILGNLLGAAAAYRKGVFDKTIFPVALFVNSIPYYALAIILLYFFGVYLGWFPIGGGYS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
RTLLPSWSWAFVIDVLHHYFLPFISIVLVTIGGQAIGMREMSIYELNTDYVTYSKMLGIK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEECCCHHHHHHHHCCC
DKKIQSYVFKNAVLPQITGLAISLGTMVGGALITEIVFGYPGVGTWLFNGIRQLDYPMIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHC
GSTLIIAMMVLIANFILDMVYGLIDPRIKAAQTEEG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MKGFTRYFFQKLFWYLIAFFLALFLNFFLPRLIPGDPISVIVSKMMSGTVASETQERVYQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
SFVEEFGLDKPLPIQFFNYIGNVFRGDLGTSFSLYPLSVNEVLGNAIVWTISLQFPAIIV
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCEEEEEEECHHHHHHH
GWILGNLLGAAAAYRKGVFDKTIFPVALFVNSIPYYALAIILLYFFGVYLGWFPIGGGYS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
RTLLPSWSWAFVIDVLHHYFLPFISIVLVTIGGQAIGMREMSIYELNTDYVTYSKMLGIK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEECCCHHHHHHHHCCC
DKKIQSYVFKNAVLPQITGLAISLGTMVGGALITEIVFGYPGVGTWLFNGIRQLDYPMIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHC
GSTLIIAMMVLIANFILDMVYGLIDPRIKAAQTEEG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA