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The map label for this gene is ybbD [H]

Identifier: 160901962

GI number: 160901962

Start: 523713

End: 525299

Strand: Direct

Name: ybbD [H]

Synonym: Pmob_0484

Alternate gene names: 160901962

Gene position: 523713-525299 (Clockwise)

Preceding gene: 160901961

Following gene: 160901963

Centisome position: 24.14

GC content: 32.77

Gene sequence:

>1587_bases
ATGGAAAGTTTAGAGAAGGCTTTGGGGAAACTATTCTTAATAGGGATTCAAGGAACCTCTTTAAACAACGAAAATATGAA
GGTTTTAAAATCAACTTTGCCTGGGGTTATCATTTTCTTTTCACGAAACATAGAAAACAAATATCAACTTAGCAAGTTTA
TCGAAGATATTAAAAATTTTTTAGATTACGAACCCTTATTTTGTATCGATCAAGAAGGTGGAACGGTAGCAAGATTAAAA
AAAGGATTTACTGTTGTACCCAGCGCTATGGGTATAACTGCGACTAACGAAGCAGAGAATGCATATCTTTCTGCAAATTT
ACTTGCAAAAGAAATGTTAGCAGTTGGAATCGATTGGAATCTTGCTCCAGTTGTTGATATCAACAACAACCCAAAGAATT
CTGTAATTGGAATTAGAAGTTTTTCCGATGATAAAAATGTGGTACTAAAGTTTGCCCGTGAATATGTGAAGGGATTGCAT
GACGGGGGAGTACTTTCTTGTCTAAAACATTTCCCTGGTATTGGGAACGTCAACACCGATCCTCATTTAGACCTTCCCCA
AGGCGAATTAAGCAAAGATGATCTTCTTTCAACAGAGTTATTCCCGTTTCTAAATATTGATTCTCCTTCATGGATGCCGA
CTCATGTGTACCTTTCCAAGATACAAAATAAAAAAGAACCAGCATCTTTATCAGAAGAGATTTTAACAGGATTGGCAAGG
GAAGAACTAAAATATAAAGGAGTTTTGGTTGCGGATGATTTTGAGATGGGGGGAGTAGCAAACTTTTATTCAGCCCAAGA
GGCAGTAATAAAATCACTGAATGCCGGAATGGACATAGTTAGTATCTGCCATTCTTTTGAAAAACAATCAGCAGCCAAAA
ACGCTGTATTGAGAGAGTATAAAAATAACGAAAATTTTAAAAAGAAGATAAATTCATCACTAGAGAGAATCCAATCGTTA
ATGAAAATTTCAGCAGATTTGAGGGAGAAAAACAATAATAAAATATCACTAGAAGAAATTGGCAAAAAAGAATATATAAA
CTTAGCTAAAAATATTTTTGATAAATCTATCACTGTTCTTAATATGTCTCATGACAAAAGCTTTTTGCCTTTAAAAAACG
TTGATGAAATTTATTACTTTGCTAAAGAGTCATTATCTTACGGAATCGAAGACAAAAGAACACAAATTTCTTATATTATT
GAGCCAATATCAAAAGAACTCAAAGCAAAAGTAAACATTTTAGAAACGAGTAAAATAATTGACCCTCTGGTAAGGGAAGA
AATAATTCAAAACTCTAAAAACAAAACTATCTTGGTTCTAGCTGAAAATGCATATTTGCATTCAGAATTGGTTGATTTGA
TAAGTAACATGTCCCAAAAATCAAAAAAACTAATTTTAGTTGCTTTAAGAAACCCATATGACGTATTTATTCCTAAAGTA
AAGTACGGAATTTGCACATACGGTTTTAATGAAAATATTCAAACTTCTTTGCTTAAAATTCTCAAAGGAGAAATAAAACC
AACTGGGAATTTACCAATTAAACGGAGGCTAGAAAATGCTAGAGAATCTGGAAACCGAAAAAAGTAA

Upstream 100 bases:

>100_bases
TCTTTGAGAATAATGACACTTATTTAAATGAATTGTACAAGAGCTCCCAAGATTTCATTGATTTTTGTGAAGATATACTA
TTATATGGAGGATTAAAACT

Downstream 100 bases:

>100_bases
CCCTAAGACTCAGAATTTGGACGAGATGGACATACATGAAATACTAAGAATAATTAATCAAGAGGATGCAACAATAGCGT
TATCCATCGCCGAAAATTTA

Product: glycoside hydrolase family 3 protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MESLEKALGKLFLIGIQGTSLNNENMKVLKSTLPGVIIFFSRNIENKYQLSKFIEDIKNFLDYEPLFCIDQEGGTVARLK
KGFTVVPSAMGITATNEAENAYLSANLLAKEMLAVGIDWNLAPVVDINNNPKNSVIGIRSFSDDKNVVLKFAREYVKGLH
DGGVLSCLKHFPGIGNVNTDPHLDLPQGELSKDDLLSTELFPFLNIDSPSWMPTHVYLSKIQNKKEPASLSEEILTGLAR
EELKYKGVLVADDFEMGGVANFYSAQEAVIKSLNAGMDIVSICHSFEKQSAAKNAVLREYKNNENFKKKINSSLERIQSL
MKISADLREKNNNKISLEEIGKKEYINLAKNIFDKSITVLNMSHDKSFLPLKNVDEIYYFAKESLSYGIEDKRTQISYII
EPISKELKAKVNILETSKIIDPLVREEIIQNSKNKTILVLAENAYLHSELVDLISNMSQKSKKLILVALRNPYDVFIPKV
KYGICTYGFNENIQTSLLKILKGEIKPTGNLPIKRRLENARESGNRKK

Sequences:

>Translated_528_residues
MESLEKALGKLFLIGIQGTSLNNENMKVLKSTLPGVIIFFSRNIENKYQLSKFIEDIKNFLDYEPLFCIDQEGGTVARLK
KGFTVVPSAMGITATNEAENAYLSANLLAKEMLAVGIDWNLAPVVDINNNPKNSVIGIRSFSDDKNVVLKFAREYVKGLH
DGGVLSCLKHFPGIGNVNTDPHLDLPQGELSKDDLLSTELFPFLNIDSPSWMPTHVYLSKIQNKKEPASLSEEILTGLAR
EELKYKGVLVADDFEMGGVANFYSAQEAVIKSLNAGMDIVSICHSFEKQSAAKNAVLREYKNNENFKKKINSSLERIQSL
MKISADLREKNNNKISLEEIGKKEYINLAKNIFDKSITVLNMSHDKSFLPLKNVDEIYYFAKESLSYGIEDKRTQISYII
EPISKELKAKVNILETSKIIDPLVREEIIQNSKNKTILVLAENAYLHSELVDLISNMSQKSKKLILVALRNPYDVFIPKV
KYGICTYGFNENIQTSLLKILKGEIKPTGNLPIKRRLENARESGNRKK
>Mature_528_residues
MESLEKALGKLFLIGIQGTSLNNENMKVLKSTLPGVIIFFSRNIENKYQLSKFIEDIKNFLDYEPLFCIDQEGGTVARLK
KGFTVVPSAMGITATNEAENAYLSANLLAKEMLAVGIDWNLAPVVDINNNPKNSVIGIRSFSDDKNVVLKFAREYVKGLH
DGGVLSCLKHFPGIGNVNTDPHLDLPQGELSKDDLLSTELFPFLNIDSPSWMPTHVYLSKIQNKKEPASLSEEILTGLAR
EELKYKGVLVADDFEMGGVANFYSAQEAVIKSLNAGMDIVSICHSFEKQSAAKNAVLREYKNNENFKKKINSSLERIQSL
MKISADLREKNNNKISLEEIGKKEYINLAKNIFDKSITVLNMSHDKSFLPLKNVDEIYYFAKESLSYGIEDKRTQISYII
EPISKELKAKVNILETSKIIDPLVREEIIQNSKNKTILVLAENAYLHSELVDLISNMSQKSKKLILVALRNPYDVFIPKV
KYGICTYGFNENIQTSLLKILKGEIKPTGNLPIKRRLENARESGNRKK

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=281, Percent_Identity=33.0960854092527, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 59366; Mature: 59366

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLEKALGKLFLIGIQGTSLNNENMKVLKSTLPGVIIFFSRNIENKYQLSKFIEDIKNF
CCHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
LDYEPLFCIDQEGGTVARLKKGFTVVPSAMGITATNEAENAYLSANLLAKEMLAVGIDWN
HCCCCEEEEECCCCCHHHHHCCCEECCCCCCCEECCCCCCCEEHHHHHHHHHHHHCCCCC
LAPVVDINNNPKNSVIGIRSFSDDKNVVLKFAREYVKGLHDGGVLSCLKHFPGIGNVNTD
CEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
PHLDLPQGELSKDDLLSTELFPFLNIDSPSWMPTHVYLSKIQNKKEPASLSEEILTGLAR
CCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
EELKYKGVLVADDFEMGGVANFYSAQEAVIKSLNAGMDIVSICHSFEKQSAAKNAVLREY
HHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
KNNENFKKKINSSLERIQSLMKISADLREKNNNKISLEEIGKKEYINLAKNIFDKSITVL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHHCCEEEE
NMSHDKSFLPLKNVDEIYYFAKESLSYGIEDKRTQISYIIEPISKELKAKVNILETSKII
EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPLVREEIIQNSKNKTILVLAENAYLHSELVDLISNMSQKSKKLILVALRNPYDVFIPKV
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCE
KYGICTYGFNENIQTSLLKILKGEIKPTGNLPIKRRLENARESGNRKK
EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MESLEKALGKLFLIGIQGTSLNNENMKVLKSTLPGVIIFFSRNIENKYQLSKFIEDIKNF
CCHHHHHHCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH
LDYEPLFCIDQEGGTVARLKKGFTVVPSAMGITATNEAENAYLSANLLAKEMLAVGIDWN
HCCCCEEEEECCCCCHHHHHCCCEECCCCCCCEECCCCCCCEEHHHHHHHHHHHHCCCCC
LAPVVDINNNPKNSVIGIRSFSDDKNVVLKFAREYVKGLHDGGVLSCLKHFPGIGNVNTD
CEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
PHLDLPQGELSKDDLLSTELFPFLNIDSPSWMPTHVYLSKIQNKKEPASLSEEILTGLAR
CCCCCCCCCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
EELKYKGVLVADDFEMGGVANFYSAQEAVIKSLNAGMDIVSICHSFEKQSAAKNAVLREY
HHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
KNNENFKKKINSSLERIQSLMKISADLREKNNNKISLEEIGKKEYINLAKNIFDKSITVL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHHCCEEEE
NMSHDKSFLPLKNVDEIYYFAKESLSYGIEDKRTQISYIIEPISKELKAKVNILETSKII
EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPLVREEIIQNSKNKTILVLAENAYLHSELVDLISNMSQKSKKLILVALRNPYDVFIPKV
HHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCE
KYGICTYGFNENIQTSLLKILKGEIKPTGNLPIKRRLENARESGNRKK
EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]