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The map label for this gene is ydhJ [H]

Identifier: 160877522

GI number: 160877522

Start: 5223177

End: 5224040

Strand: Direct

Name: ydhJ [H]

Synonym: Sbal195_4421

Alternate gene names: 160877522

Gene position: 5223177-5224040 (Clockwise)

Preceding gene: 160877521

Following gene: 160877523

Centisome position: 97.68

GC content: 46.06

Gene sequence:

>864_bases
ATGGGAAAAATCTTTCGTATCAGCCTCACCCTCATTGTGGTCGCGGTTGCAGGTATCGCGGGACATTGGATATGGTCACA
CTACCTTTATTCTCCTTGGACTCGCGACGGCCGAGTTCGCGCCGAAATCATTACCATAGCGCCAGATGTGTACGGTTGGG
TGAATCAACTGAATGTAAAAGACAATCAAATCGTCAATAAGGGTGATGTGTTGTTCACTGTGGACGATACCCGCTACAAG
GCCACCATTGCCGAATTGAATGCCAAAGCGGAAAGCCAAAAATTAGCATGGGAACTGGCAAAACATAAGTACAAACGTCG
TATCGGTTTGACCAATGACAACTTAGTTAGCAAAGAAACCTTCGACGAAGCTTTTATCAATACTGAACTGGCACGAACCA
GTTATGAGCTCGCACAGGCGCAATTAAATACCGCCAAAATTGACTTAGCGCGAACGCAAATTCACGCTCCCGAAAACGGT
ACTCTGATCAATTTAAGTCTGCGCAATGGCAACTATGTCAGCAAAGGCAACTCAGTATTTTCGCTGGTCAAACAAGATTC
TCTCTATATCACAGGCTATTTTGAAGAAACCAAAATCCCCTTGGTTCACATAGGTCAAAACGCCGATGTTAGCCTGATGA
GTGGCGGCCAGGTCTTGCATGGCAAAGTGACCAGCATAGGTAAAGCAATCGCCAATACCAATGTCACTACTAATGGACAG
TTATTGCCGCAAATCGGCCAAACCTTCAATTGGGTGAGGTTGTCGCAGCGTATTCCGGTCGATATTGAGCTAGATAGCAT
TCCTAAGGACATAGAGCTGAGCGTCGGCATGACAGTTTCCATCCAGCTACAGACTGACAAATAG

Upstream 100 bases:

>100_bases
TGGGCTCTATCACAAGCTGTGGCGCGAAGCTTGGTTCGAAGTTGGGCTGTTTATCTGCTATCTGGCGTTGGTCATTTACT
TGCTTGGGAGTTGATTATTC

Downstream 100 bases:

>100_bases
TCATTATGACGCTGTTACTGAAGAGTTTATTCTTTCCAGACCGACGAACCCTCATCTTCGCGATTAAGGGCGTGATCTCG
ATGGCGCTCGCCTTATATGT

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MGKIFRISLTLIVVAVAGIAGHWIWSHYLYSPWTRDGRVRAEIITIAPDVYGWVNQLNVKDNQIVNKGDVLFTVDDTRYK
ATIAELNAKAESQKLAWELAKHKYKRRIGLTNDNLVSKETFDEAFINTELARTSYELAQAQLNTAKIDLARTQIHAPENG
TLINLSLRNGNYVSKGNSVFSLVKQDSLYITGYFEETKIPLVHIGQNADVSLMSGGQVLHGKVTSIGKAIANTNVTTNGQ
LLPQIGQTFNWVRLSQRIPVDIELDSIPKDIELSVGMTVSIQLQTDK

Sequences:

>Translated_287_residues
MGKIFRISLTLIVVAVAGIAGHWIWSHYLYSPWTRDGRVRAEIITIAPDVYGWVNQLNVKDNQIVNKGDVLFTVDDTRYK
ATIAELNAKAESQKLAWELAKHKYKRRIGLTNDNLVSKETFDEAFINTELARTSYELAQAQLNTAKIDLARTQIHAPENG
TLINLSLRNGNYVSKGNSVFSLVKQDSLYITGYFEETKIPLVHIGQNADVSLMSGGQVLHGKVTSIGKAIANTNVTTNGQ
LLPQIGQTFNWVRLSQRIPVDIELDSIPKDIELSVGMTVSIQLQTDK
>Mature_286_residues
GKIFRISLTLIVVAVAGIAGHWIWSHYLYSPWTRDGRVRAEIITIAPDVYGWVNQLNVKDNQIVNKGDVLFTVDDTRYKA
TIAELNAKAESQKLAWELAKHKYKRRIGLTNDNLVSKETFDEAFINTELARTSYELAQAQLNTAKIDLARTQIHAPENGT
LINLSLRNGNYVSKGNSVFSLVKQDSLYITGYFEETKIPLVHIGQNADVSLMSGGQVLHGKVTSIGKAIANTNVTTNGQL
LPQIGQTFNWVRLSQRIPVDIELDSIPKDIELSVGMTVSIQLQTDK

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=274, Percent_Identity=44.1605839416058, Blast_Score=234, Evalue=4e-63,
Organism=Escherichia coli, GI1789637, Length=273, Percent_Identity=38.8278388278388, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1790519, Length=299, Percent_Identity=27.7591973244147, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1788711, Length=333, Percent_Identity=26.7267267267267, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789041, Length=327, Percent_Identity=26.2996941896024, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 31966; Mature: 31835

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKIFRISLTLIVVAVAGIAGHWIWSHYLYSPWTRDGRVRAEIITIAPDVYGWVNQLNVK
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHCCCCC
DNQIVNKGDVLFTVDDTRYKATIAELNAKAESQKLAWELAKHKYKRRIGLTNDNLVSKET
CCEEECCCCEEEEECCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
FDEAFINTELARTSYELAQAQLNTAKIDLARTQIHAPENGTLINLSLRNGNYVSKGNSVF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEECCCCEE
SLVKQDSLYITGYFEETKIPLVHIGQNADVSLMSGGQVLHGKVTSIGKAIANTNVTTNGQ
EEEECCCEEEEEEECCCCCCEEEECCCCCEEEEECCEEEECHHHHHHHHHHCCCCCCCCE
LLPQIGQTFNWVRLSQRIPVDIELDSIPKDIELSVGMTVSIQLQTDK
ECHHHCCCCCEEEECCCCCEEEEECCCCCCEEEEECEEEEEEEEECC
>Mature Secondary Structure 
GKIFRISLTLIVVAVAGIAGHWIWSHYLYSPWTRDGRVRAEIITIAPDVYGWVNQLNVK
CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCHHHHHHHCCCCC
DNQIVNKGDVLFTVDDTRYKATIAELNAKAESQKLAWELAKHKYKRRIGLTNDNLVSKET
CCEEECCCCEEEEECCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
FDEAFINTELARTSYELAQAQLNTAKIDLARTQIHAPENGTLINLSLRNGNYVSKGNSVF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEECCCCEE
SLVKQDSLYITGYFEETKIPLVHIGQNADVSLMSGGQVLHGKVTSIGKAIANTNVTTNGQ
EEEECCCEEEEEEECCCCCCEEEECCCCCEEEEECCEEEECHHHHHHHHHHCCCCCCCCE
LLPQIGQTFNWVRLSQRIPVDIELDSIPKDIELSVGMTVSIQLQTDK
ECHHHCCCCCEEEECCCCCEEEEECCCCCCEEEEECEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]