Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 160876657

GI number: 160876657

Start: 4174941

End: 4175840

Strand: Direct

Name: ltrA [H]

Synonym: Sbal195_3551

Alternate gene names: 160876657

Gene position: 4174941-4175840 (Clockwise)

Preceding gene: 160876655

Following gene: 160876675

Centisome position: 78.08

GC content: 49.44

Gene sequence:

>900_bases
ATGAAACTTAATTATTCCTTAGACGATATGCGCTTATTTTGGGTGGTGGCACAACAAGGGAGCTTTAAGCTCGCGGCGCA
ACACTTAGGCATTCCACCTTCAACCTTAAGTCGTCGAATCAATCTGTTAGAACAATCATTAGGCCTGCGTTTACTGCACA
GAGACGCCCATAGAGTCAACCTTACCGCCACAGGTCAGCGTTATCTCGAACGCTGCGGACCGCTGTTTATCGAGTTAAAC
CACGTATCCGGTGAGTTGCATGCGGATAAACATCAAGCGGTTGGCAAACTGCGGATCTCGGCGCCCATTAACACTACCTA
TCGCTGGCTGGGTGAATCACTCAACGCCTTCCAACGGCACTATCCCAATATCGACATCGATTTAAGCCTGTCGAACATGA
ATATCGATGTCAGTGAAAACGCCATCGATATCGCCTTTCGAGTGGGTGAACCTAAAGATCCCGATTGGATTGCAAGGCCG
CTCACCACGATTAGTTTTGTGCTTTGCGCCAGCACATCGGCAACCCAGTGGCATACACTGCAAGCCATAGAAGCACTCGA
ACAACATCCGGTTATCATCGCAAAGCCCGTAAAAACATGGCGCTTACAGCACAATATCACAGGGCAAGATTTCGAGTTTG
AGCCGAGGGGGAATATCAAATTAGCCGTCGATGATATGGCGATCGCCAGTCAGGCTGTGGTGGCGGGACTCGGTATTGGA
CTATTGCCCATCAGCATGGCGAGTGAACAGATACAAAGCGGCAAGCTCGTTCAAATACTGCCAGAATGGCAAGGTATTCC
GCGCACCGCCTACTTGATGTATCGCGATCGGGACAACTTACCCTTGCGGGTCAGACTGTTAATTGATTTTATGTTGGCAA
ATCCACCCGAGGCTTATTGA

Upstream 100 bases:

>100_bases
GATTTCATATCGGACTCTAGGGAGATAATTGGGATTGAGCTTAGTTTATAAGTTTCATATATTATTAAAATCTACAAGAT
TGAGAGTTTAAATTCCAAAT

Downstream 100 bases:

>100_bases
GCCATTCAGACATGAGTCTGCGGCGTATCGACTCAGTAAACGCTAGAGCGCTAAATCAAGCTGAGTCTGGGCATTTGGGA
TTTCGGGCACTGCGAGGATA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLTATGQRYLERCGPLFIELN
HVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYPNIDIDLSLSNMNIDVSENAIDIAFRVGEPKDPDWIARP
LTTISFVLCASTSATQWHTLQAIEALEQHPVIIAKPVKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVVAGLGIG
LLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLANPPEAY

Sequences:

>Translated_299_residues
MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLTATGQRYLERCGPLFIELN
HVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYPNIDIDLSLSNMNIDVSENAIDIAFRVGEPKDPDWIARP
LTTISFVLCASTSATQWHTLQAIEALEQHPVIIAKPVKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVVAGLGIG
LLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLANPPEAY
>Mature_299_residues
MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVNLTATGQRYLERCGPLFIELN
HVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRHYPNIDIDLSLSNMNIDVSENAIDIAFRVGEPKDPDWIARP
LTTISFVLCASTSATQWHTLQAIEALEQHPVIIAKPVKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVVAGLGIG
LLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLANPPEAY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=29.3103448275862, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081978, Length=305, Percent_Identity=28.8524590163934, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=27.3648648648649, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=27.4914089347079, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=26.8707482993197, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789440, Length=303, Percent_Identity=25.7425742574257, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787589, Length=262, Percent_Identity=26.7175572519084, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786448, Length=252, Percent_Identity=28.968253968254, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=26.5873015873016, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788706, Length=143, Percent_Identity=33.5664335664336, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788748, Length=257, Percent_Identity=27.2373540856031, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=280, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790011, Length=309, Percent_Identity=23.3009708737864, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33710; Mature: 33710

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN
CCCCCCCCCEEEEEEEECCCCEEEHHHHCCCCHHHHHHHHHHHHHHHCHHEEECCCEEEE
LTATGQRYLERCGPLFIELNHVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRH
EEECHHHHHHHCCCEEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHH
YPNIDIDLSLSNMNIDVSENAIDIAFRVGEPKDPDWIARPLTTISFVLCASTSATQWHTL
CCCCEEEEEEECEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHEEHEECCCCCCHHHHH
QAIEALEQHPVIIAKPVKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVVAGLGIG
HHHHHHHHCCEEEEECCEEEEEEECCCCCCEEECCCCCEEEEECCHHHHHHHHHHHCCHH
LLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLANPPEAY
HEEHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEHHHHHCCCCCCC
>Mature Secondary Structure
MKLNYSLDDMRLFWVVAQQGSFKLAAQHLGIPPSTLSRRINLLEQSLGLRLLHRDAHRVN
CCCCCCCCCEEEEEEEECCCCEEEHHHHCCCCHHHHHHHHHHHHHHHCHHEEECCCEEEE
LTATGQRYLERCGPLFIELNHVSGELHADKHQAVGKLRISAPINTTYRWLGESLNAFQRH
EEECHHHHHHHCCCEEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHH
YPNIDIDLSLSNMNIDVSENAIDIAFRVGEPKDPDWIARPLTTISFVLCASTSATQWHTL
CCCCEEEEEEECEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHEEHEECCCCCCHHHHH
QAIEALEQHPVIIAKPVKTWRLQHNITGQDFEFEPRGNIKLAVDDMAIASQAVVAGLGIG
HHHHHHHHCCEEEEECCEEEEEEECCCCCCEEECCCCCEEEEECCHHHHHHHHHHHCCHH
LLPISMASEQIQSGKLVQILPEWQGIPRTAYLMYRDRDNLPLRVRLLIDFMLANPPEAY
HEEHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]