| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is foxA [H]
Identifier: 160876571
GI number: 160876571
Start: 4083809
End: 4085971
Strand: Reverse
Name: foxA [H]
Synonym: Sbal195_3465
Alternate gene names: 160876571
Gene position: 4085971-4083809 (Counterclockwise)
Preceding gene: 160876572
Following gene: 160876570
Centisome position: 76.41
GC content: 46.93
Gene sequence:
>2163_bases ATGACCTCTTTTTATATTCCCAAGCGCGCTGCGCTGTTGCTGGGCGCCTTGTTTGTACTCAATCCTATTTCAATGTTGTT GGCTGCGGAGGATGCTCAATCTGGTAATGCTATTTTAGAGACTGACATTGAGCGTTTAAGTATCCACTATCGTCAAGCTT ACCGTGGCAATGTGTCTGCAACTGAACTTCCGCAAGCGATAAGTGTGTTAGACGAGCAATTGATTAAAGATGCGGGGCTA ACGCGGTTTCAAGATGTACTGGATTATTCCGCCAGTGTGGCGCGGCAAAACAATGGTGGCGGTTTATGGGATAGCTTTTC TCTGCGCGGCTTTCCGGGTAATGAAAACATGCCATCGGGCTATTTAATCAATGGCTTTAATGGTGGTCGAGGTTTTAGTG GCCATCGAGATTTATCGAATGTGGCCTACGTGGAGATCTTAAAAGGCCCAGGTTCGGCGCTTTATGGTCGCTCAGAGCCC GGCGGTACAGTCAATATTGTGACTAAGAAACCTCAGTATCAAACCAGTGGTTATTTAAAGGCATCGGCAGGGAGTTTCGA TCAATATCGATTAGAGGGAGATGTGACTTCCGGCTTGACCGACAATGTGGCATTTCGAATTAACGGCGCGTGGCAGGAAC ACGATAGTTTTCGCGATTATGTGTTCAGCGATAAAAAAATCGTCACGCCGTCAGTGCGTTGGCAGATTTCCGATAAAGCC TCGCTACTCTATGAAATGGAATACCTCAAGCAGGAACAGTTATTCGATCGTGGCATTATTGTGCTCAACAACGATATCAA TACTGTGCCACGCTCGCGTTATTTAGGTGAGCCTAATGATGGCGCAACTGTGGTCAATGCCACTGGGCACCAGCTGACCT ATGACTATGAATTAAATGATGATTGGTCACTCACCGCGGGCTATAACTATCGCGATTCTAGCTTGAAGGGCTATTCGTCC GATGCCGAGTTGGCAAAGGGTCGACAATCGCTATTTGATGATGGTCGCAGGCTTACCCGACAGCACAGATACCGAGATTA TGCCTCCGAGGATAATTCACTGCGTCTAGAGTTAAGTGGCCATGTGGATACGGGTTTTATTCGCCACAATTTGCTGCTCG GCGCCGATGCCTATCACTACAGTTTAAAGACAGGATTGTATCGCTATCGCGGCAAAAAGGGCGAATATGCCATTGATATT TATGAGCCGCAATATGGCAGACCTCAGCCAGAGGTGAGTTTGTTGTATGAGAATAACGAAACCCAAAAGGCGTGGGGCAC ATACCTGCAAGATCAAATGGATCTCACTGAAAAGTGGAAGCTGCACCTTGGGTTAAGGTTCGATAGTTATCAGCAAGATA TCAGTGAAGTCGCGAAAAATACTCTATCAGAGCAAACCGATAGTAGGGTTAGCCCTAAAGTGGGTCTGGTGTATTTATGG TCCAATGCCTTAAGTTTCTATAGTTCTTATTCTGAAGGCTTTTTACCGCTTTCGGGAACTGACTTTGCGGGTCAGCCCTT CGAAGCCGAAGAGAGCAAGTCAGTTGAGCTAGGGATGAAGTTTAATGGCAATTGGTTTAATGGCTTAGCTGATAATGGCA TAGCATTCAGTGGCAGCTTGGCGGTGTTTGATGCGCAAAAGAGCAATATTCTGACCTCAGATCCGCTCAATGTCGGATTT TCCGCCACCTTAGGTAAAGCAAAAAGTAGCGGCGTTGAACTCGATTTAGTTGCCGAGCTGACGGAGGATTTACAGGCAAA ATTATCCTACGCCTATTTGAATACCCGCACCGCTAACGACAGCTTGAATCCCGACTGGGGCGTGCTTATTCCTGCGGGAA GTCCTCTGGTGAATGTGCCAAAACATACTGCGAGCGTGATTCTGAAGCGGGATCTGAATGCGTTTTCTATCGATGGACAT TTAGGCATGAGTTGGCGTTATGTGGATTCTCGTCTGGGTGATTCTGCCGATCCGAGTTTCCAATTACCGTCGTATCAGTT GCTTGGAGTGTTTATGAATATGCACTTGAGCGACAACTTTATCCTTGGCGTCAATCTGGACAACTTATTGGATGAGCACT ATATCGCCAGCAGTTATTCGGCACTTTGGGCGGTACCCGGTGAGCCACGTAGCATTAAAGTGAGTGTCAGCTATGAGTTC TAA
Upstream 100 bases:
>100_bases CCTTTAACAGCATAAGTTACTGTTTATTCAATTTATCTTAATTAACTTTGAGCGCCTTGGCTTAGCTAAGGCGCCGATGC TGTTTATGTTCGGAGTGAAA
Downstream 100 bases:
>100_bases CATTAGCCGTTCTAATATCTGCTCGAATATAAACACTCGTCCTGAGTTACCGTCAGGTTTTGCCGAGCAAGAACTGAGTC GCTCTATTGGCCGTAGCCGT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 720; Mature: 719
Protein sequence:
>720_residues MTSFYIPKRAALLLGALFVLNPISMLLAAEDAQSGNAILETDIERLSIHYRQAYRGNVSATELPQAISVLDEQLIKDAGL TRFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGYLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEP GGTVNIVTKKPQYQTSGYLKASAGSFDQYRLEGDVTSGLTDNVAFRINGAWQEHDSFRDYVFSDKKIVTPSVRWQISDKA SLLYEMEYLKQEQLFDRGIIVLNNDINTVPRSRYLGEPNDGATVVNATGHQLTYDYELNDDWSLTAGYNYRDSSLKGYSS DAELAKGRQSLFDDGRRLTRQHRYRDYASEDNSLRLELSGHVDTGFIRHNLLLGADAYHYSLKTGLYRYRGKKGEYAIDI YEPQYGRPQPEVSLLYENNETQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDISEVAKNTLSEQTDSRVSPKVGLVYLW SNALSFYSSYSEGFLPLSGTDFAGQPFEAEESKSVELGMKFNGNWFNGLADNGIAFSGSLAVFDAQKSNILTSDPLNVGF SATLGKAKSSGVELDLVAELTEDLQAKLSYAYLNTRTANDSLNPDWGVLIPAGSPLVNVPKHTASVILKRDLNAFSIDGH LGMSWRYVDSRLGDSADPSFQLPSYQLLGVFMNMHLSDNFILGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF
Sequences:
>Translated_720_residues MTSFYIPKRAALLLGALFVLNPISMLLAAEDAQSGNAILETDIERLSIHYRQAYRGNVSATELPQAISVLDEQLIKDAGL TRFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGYLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEP GGTVNIVTKKPQYQTSGYLKASAGSFDQYRLEGDVTSGLTDNVAFRINGAWQEHDSFRDYVFSDKKIVTPSVRWQISDKA SLLYEMEYLKQEQLFDRGIIVLNNDINTVPRSRYLGEPNDGATVVNATGHQLTYDYELNDDWSLTAGYNYRDSSLKGYSS DAELAKGRQSLFDDGRRLTRQHRYRDYASEDNSLRLELSGHVDTGFIRHNLLLGADAYHYSLKTGLYRYRGKKGEYAIDI YEPQYGRPQPEVSLLYENNETQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDISEVAKNTLSEQTDSRVSPKVGLVYLW SNALSFYSSYSEGFLPLSGTDFAGQPFEAEESKSVELGMKFNGNWFNGLADNGIAFSGSLAVFDAQKSNILTSDPLNVGF SATLGKAKSSGVELDLVAELTEDLQAKLSYAYLNTRTANDSLNPDWGVLIPAGSPLVNVPKHTASVILKRDLNAFSIDGH LGMSWRYVDSRLGDSADPSFQLPSYQLLGVFMNMHLSDNFILGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF >Mature_719_residues TSFYIPKRAALLLGALFVLNPISMLLAAEDAQSGNAILETDIERLSIHYRQAYRGNVSATELPQAISVLDEQLIKDAGLT RFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSGYLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPG GTVNIVTKKPQYQTSGYLKASAGSFDQYRLEGDVTSGLTDNVAFRINGAWQEHDSFRDYVFSDKKIVTPSVRWQISDKAS LLYEMEYLKQEQLFDRGIIVLNNDINTVPRSRYLGEPNDGATVVNATGHQLTYDYELNDDWSLTAGYNYRDSSLKGYSSD AELAKGRQSLFDDGRRLTRQHRYRDYASEDNSLRLELSGHVDTGFIRHNLLLGADAYHYSLKTGLYRYRGKKGEYAIDIY EPQYGRPQPEVSLLYENNETQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDISEVAKNTLSEQTDSRVSPKVGLVYLWS NALSFYSSYSEGFLPLSGTDFAGQPFEAEESKSVELGMKFNGNWFNGLADNGIAFSGSLAVFDAQKSNILTSDPLNVGFS ATLGKAKSSGVELDLVAELTEDLQAKLSYAYLNTRTANDSLNPDWGVLIPAGSPLVNVPKHTASVILKRDLNAFSIDGHL GMSWRYVDSRLGDSADPSFQLPSYQLLGVFMNMHLSDNFILGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=709, Percent_Identity=24.6826516220028, Blast_Score=160, Evalue=4e-40, Organism=Escherichia coli, GI1787024, Length=786, Percent_Identity=21.1195928753181, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1787344, Length=705, Percent_Identity=22.2695035460993, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1787723, Length=686, Percent_Identity=23.7609329446064, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80100; Mature: 79969
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFYIPKRAALLLGALFVLNPISMLLAAEDAQSGNAILETDIERLSIHYRQAYRGNVSA CCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCH TELPQAISVLDEQLIKDAGLTRFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCEECCCCCCCCCCCC YLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPGGTVNIVTKKPQYQTSGYLK EEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE ASAGSFDQYRLEGDVTSGLTDNVAFRINGAWQEHDSFRDYVFSDKKIVTPSVRWQISDKA ECCCCCCEEEECCCCCCCCCCCEEEEECCCHHCCCCHHHHHCCCCEEECCCEEEEECCHH SLLYEMEYLKQEQLFDRGIIVLNNDINTVPRSRYLGEPNDGATVVNATGHQLTYDYELND HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCCEEEECCCCEEEEEEECCC DWSLTAGYNYRDSSLKGYSSDAELAKGRQSLFDDGRRLTRQHRYRDYASEDNSLRLELSG CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC HVDTGFIRHNLLLGADAYHYSLKTGLYRYRGKKGEYAIDIYEPQYGRPQPEVSLLYENNE CCCCCEEEEEEEECCCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCC TQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDISEVAKNTLSEQTDSRVSPKVGLVYLW CHHHHHHHHHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE SNALSFYSSYSEGFLPLSGTDFAGQPFEAEESKSVELGMKFNGNWFNGLADNGIAFSGSL HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCEEEECCE AVFDAQKSNILTSDPLNVGFSATLGKAKSSGVELDLVAELTEDLQAKLSYAYLNTRTAND EEEECCCCCCEECCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHEEEEEEEEECCCC SLNPDWGVLIPAGSPLVNVPKHTASVILKRDLNAFSIDGHLGMSWRYVDSRLGDSADPSF CCCCCCEEEEECCCCCEECCCHHHHHHHCCCCCEEEECCCCCCEEEEHHHHCCCCCCCCC QLPSYQLLGVFMNMHLSDNFILGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF CCCCHHHHHHHHHEEECCCEEEEECHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECC >Mature Secondary Structure TSFYIPKRAALLLGALFVLNPISMLLAAEDAQSGNAILETDIERLSIHYRQAYRGNVSA CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCHHHHHHHHHHHHCCCCCH TELPQAISVLDEQLIKDAGLTRFQDVLDYSASVARQNNGGGLWDSFSLRGFPGNENMPSG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCEECCCCCCCCCCCC YLINGFNGGRGFSGHRDLSNVAYVEILKGPGSALYGRSEPGGTVNIVTKKPQYQTSGYLK EEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEE ASAGSFDQYRLEGDVTSGLTDNVAFRINGAWQEHDSFRDYVFSDKKIVTPSVRWQISDKA ECCCCCCEEEECCCCCCCCCCCEEEEECCCHHCCCCHHHHHCCCCEEECCCEEEEECCHH SLLYEMEYLKQEQLFDRGIIVLNNDINTVPRSRYLGEPNDGATVVNATGHQLTYDYELND HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCCEEEECCCCEEEEEEECCC DWSLTAGYNYRDSSLKGYSSDAELAKGRQSLFDDGRRLTRQHRYRDYASEDNSLRLELSG CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC HVDTGFIRHNLLLGADAYHYSLKTGLYRYRGKKGEYAIDIYEPQYGRPQPEVSLLYENNE CCCCCEEEEEEEECCCCEEEHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEEECCC TQKAWGTYLQDQMDLTEKWKLHLGLRFDSYQQDISEVAKNTLSEQTDSRVSPKVGLVYLW CHHHHHHHHHHHHCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE SNALSFYSSYSEGFLPLSGTDFAGQPFEAEESKSVELGMKFNGNWFNGLADNGIAFSGSL HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCCCEEEECCE AVFDAQKSNILTSDPLNVGFSATLGKAKSSGVELDLVAELTEDLQAKLSYAYLNTRTAND EEEECCCCCCEECCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHEEEEEEEEECCCC SLNPDWGVLIPAGSPLVNVPKHTASVILKRDLNAFSIDGHLGMSWRYVDSRLGDSADPSF CCCCCCEEEEECCCCCEECCCHHHHHHHCCCCCEEEECCCCCCEEEEHHHHCCCCCCCCC QLPSYQLLGVFMNMHLSDNFILGVNLDNLLDEHYIASSYSALWAVPGEPRSIKVSVSYEF CCCCHHHHHHHHHEEECCCEEEEECHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]