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The map label for this gene is yddU [C]

Identifier: 160876428

GI number: 160876428

Start: 3915817

End: 3918144

Strand: Reverse

Name: yddU [C]

Synonym: Sbal195_3322

Alternate gene names: 160876428

Gene position: 3918144-3915817 (Counterclockwise)

Preceding gene: 160876429

Following gene: 160876427

Centisome position: 73.27

GC content: 47.38

Gene sequence:

>2328_bases
ATGCTCAAGGCAAGCCATTACATGCTAAATAGTTTTCGCGCACGGCTGATTTTAGTTTTCTTTATTGTGCTGACTCTAGT
GCAGTTTGCCACGGCATTTTCCGTATTGACGGCGACCGAAAGGGACAACTTTTTACAACAACAAAAAAGTTTAGATATTG
GTGCCAATGTGTTTCTCGAAGTCCTTTCGAATCGCGGTATTCAGCTCAGCCAAAGTTTGTCCGTGCTCAGTGCCGATTTT
GGTTTTAAGCGCGCGATTGCCACCGGCGAGCAAGAAACCATTGAGTCAGTGTTATCCAATCACGGCTCTCGTATCGGCGC
CGACGCTGCAGTATTGTTGTCTCCAAAAGGAGAGCTCTTGACCTCGAGTCTGCCCGGACTCACTCAGGATGACATTCAAT
CCTTATTCGATATGACCACCAGCAATAACAATGCTTTAGCTATCCTCAATTTTGATCATGCCAGCTATCAGTTTGTGTTG
CAGCCCGTGAAGGCGCCGACCTTGATTGCTTGGGTCGGAATGGGGTTCCTATTGGATGAGAAAGTCGCCCAACAAGCTAA
AGCCATTACCGGTATCGATGTGAGCTTTGTCAATCAAGCCACGGGTCGCACCGAAATCGCGTCAACCTTATCCGACGATG
AAAAACGCAGTGTGGTAGAGCAGGCGAGCCTATTCCCCAGCCTACTGAAAATGCCCAGTGAGAACATTCCCGTGGATTAT
CTGTCCATGGCGATCAAACTTTATGATCATAACGGCAGCCAATTAGCCCTACTGCATCAGTCAAACCTCAAGTGGCAGCA
AAGTTATCAGCATCTACGCAATAATATGTTGCTGATTTTTGCCTTGACCTTAGCGCTGGCGATTGTGATTGCGATTTGGT
TGTCGGGCAGTTTGACTGAGCCCGTTCATCAACTGGTAACTTATGCCCGTAAAATTGGTCAAGGTAAGCAGCCAGGCAGT
ATTCAAGGTGCGCCAGCAGAACTGCGGGTGTTGGCCAAAAGTTTGTCCTTGATGCGCGACGATATTGAAGCGCGGGAAAA
GGATTTAGTCTATCAATCCCGCCACGACAGTTTGACGGGATTGCTCAATCGTTTTGCGGCAAAACAGCATTTAGCGGATC
TTAAAAATGAGCTATCCGGCGCTATGGTATTGCTGGATATTAAACATTTTCGCCATATCAACGACATTATCGGTTTTGCC
AACGCCGATACCTTGTTGGTGCTTTTTGCCCGCCGTTTAGAGCAATTAGCCCCCACACCGGATTTACTCGCGCGATTAGA
CGGCGACTCTTTTTTACTCCTGTATAGCCAAGGGATTCGTCCCGAACATTTGCTGAAGTCATTGGATATGTTGGAGTCGC
CATTTCCAATCCAAGGCTCAAATATTTCTCTTACCGTGCGGGCGGGATTACTGGAAATCGATGGCAACGGTGCCGATATC
GATGTGTTAGTGCGCCGCGCCGAAATCGCCCTCAATCAAGCCTGTCTCGAAGAGCAACGTATCGTTAGTTATCGTCAGGG
CGCCGATGAGAAATACCAGCGTGAGCTGACTATTATCCGCGATTTACCCATAGGTTTGGCGCAAAACCAACTCTATCTCG
TGTTTCAACCTAAGGTGGATTTACACTTAAATCAGTGTACTGGCGCCGAGGCACTGATCCGCTGGCAGCATCCAACCTTA
GGGTTTATCCCGCCCGATGAGTTTATTCAACTCGCTGAAAACTCTGGCAACATTGATATAGTCAGCCAATGGGTGTTGAA
GCAGTCGATTAAACAATTAGTCGCATGGCAGCAGCGGGGTATGCTGCTAAAACTGGCCATTAACCTGTCGGCCCATGATT
TAGTCGATACCCGCTTGCCGAATCAAATTGCTAGTTTATTAAAAGATAATAATCTGCCAAGCGGCGCACTCTGTATTGAA
GTCACCGAAGGCGCTGTGATGAAAGATGCACAGACTGTGGTGAGCGTATTGCAGCGATTCCGTGACATGGGTATATCCGT
CGCCATCGATGACTTTGGCACAGGGCATTCATCCCTAGCTTATTTGAAAATTTTGCCCGTCAATGAAGTGAAGATTGATC
GTAGCTTTATCAAAGACATGCTCACGAATAGCCAAGATGTGATGATAGTAAACACGAGCATTCAGTTGATCCACGGCCTT
GGTTTTACCGTCGTGGCCGAAGGGGTTGAAGAACCAGAAGGCGTTGAAATCCTGCGTAACCTCAATTGCGACATCATCCA
AGGCTATGTGTTTTCAAAACCCTTAAAAGCGGCTGAATTTGATCTGTGGTTCGAAGCGTTTAACCATGCAAATCCCTTAG
ACACATAA

Upstream 100 bases:

>100_bases
GAGCTAATGTTAACCACTGGCGCGAATCAACTCAGTTTGTCCTTAGACATTGAACGCCAAGCTAAACCGTCAGCCCCGCC
GTCGGGATTTGGCCACTACG

Downstream 100 bases:

>100_bases
GTTAATTTGCCCAAGAAAGCGCACAAAAGGCGTTAAAATTAGACGTATTCGAAAGAATAAAGCGGAGTAGCGAGTGAACA
TTGCCATGAATGCATTGAAG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 775

Protein sequence:

>775_residues
MLKASHYMLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADF
GFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFVL
QPVKAPTLIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDY
LSMAIKLYDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGS
IQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKNELSGAMVLLDIKHFRHINDIIGFA
NADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADI
DVLVRRAEIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTL
GFIPPDEFIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRGMLLKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIE
VTEGAVMKDAQTVVSVLQRFRDMGISVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGL
GFTVVAEGVEEPEGVEILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHANPLDT

Sequences:

>Translated_775_residues
MLKASHYMLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADF
GFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFVL
QPVKAPTLIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDY
LSMAIKLYDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGS
IQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKNELSGAMVLLDIKHFRHINDIIGFA
NADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADI
DVLVRRAEIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTL
GFIPPDEFIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRGMLLKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIE
VTEGAVMKDAQTVVSVLQRFRDMGISVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGL
GFTVVAEGVEEPEGVEILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHANPLDT
>Mature_775_residues
MLKASHYMLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADF
GFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFVL
QPVKAPTLIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDY
LSMAIKLYDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGS
IQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKNELSGAMVLLDIKHFRHINDIIGFA
NADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADI
DVLVRRAEIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTL
GFIPPDEFIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRGMLLKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIE
VTEGAVMKDAQTVVSVLQRFRDMGISVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGL
GFTVVAEGVEEPEGVEILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHANPLDT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=424, Percent_Identity=31.6037735849057, Blast_Score=211, Evalue=2e-55,
Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=29.3023255813954, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI226510982, Length=390, Percent_Identity=26.6666666666667, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=35.5731225296443, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.1285140562249, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=29.7619047619048, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1786507, Length=261, Percent_Identity=29.5019157088123, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=29.6875, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=31.496062992126, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081743, Length=231, Percent_Identity=29.4372294372294, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081845, Length=222, Percent_Identity=31.5315315315315, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI87082096, Length=363, Percent_Identity=24.7933884297521, Blast_Score=97, Evalue=6e-21,
Organism=Escherichia coli, GI87081881, Length=209, Percent_Identity=28.7081339712919, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85812; Mature: 85812

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKASHYMLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VLSNRGIQLSQSLSVLSADFGFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELL
HHHCCCCEEHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHH
TSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFVLQPVKAPTLIAWVGMGFLLDE
HCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
KVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDY
HHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LSMAIKLYDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTE
HHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
PVHQLVTYARKIGQGKQPGSIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTG
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LLNRFAAKQHLADLKNELSGAMVLLDIKHFRHINDIIGFANADTLLVLFARRLEQLAPTP
HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
DLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADI
HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCH
DVLVRRAEIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCC
LHLNQCTGAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRG
EEECCCCCCHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
MLLKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRF
EEEEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
RDMGISVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGL
HHCCCEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCC
GFTVVAEGVEEPEGVEILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHANPLDT
CHHHHCCCCCCCCHHHHHHHCCCCEEECHHHCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLKASHYMLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VLSNRGIQLSQSLSVLSADFGFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELL
HHHCCCCEEHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHH
TSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFVLQPVKAPTLIAWVGMGFLLDE
HCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
KVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDY
HHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LSMAIKLYDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTE
HHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
PVHQLVTYARKIGQGKQPGSIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTG
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
LLNRFAAKQHLADLKNELSGAMVLLDIKHFRHINDIIGFANADTLLVLFARRLEQLAPTP
HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
DLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADI
HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCH
DVLVRRAEIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCC
LHLNQCTGAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRG
EEECCCCCCHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
MLLKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRF
EEEEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
RDMGISVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGL
HHCCCEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCC
GFTVVAEGVEEPEGVEILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHANPLDT
CHHHHCCCCCCCCHHHHHHHCCCCEEECHHHCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]