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The map label for this gene is lppB [H]

Identifier: 160876378

GI number: 160876378

Start: 3854006

End: 3854902

Strand: Reverse

Name: lppB [H]

Synonym: Sbal195_3272

Alternate gene names: 160876378

Gene position: 3854902-3854006 (Counterclockwise)

Preceding gene: 160876379

Following gene: 160876377

Centisome position: 72.09

GC content: 41.25

Gene sequence:

>897_bases
TTGTTGAATGCGGGTTTAGTCTTAAACCTCTGCTTTATATTTCTGCTTGCAGGCTGTAGCTTTCAGGCCAGCCGACCCGC
GCCCGTCGAAAATATTTCCCATAGCTACTCTAAAAACAACAAAGGCCACATTAAATCGAATTCATATAAAGTTAAGAAAG
GCGACACGCTTTACTCTATTTCTTGGGGCGCAGGAAAGGATTTTTCTGAAATAGCTAAACTTAATCAGTTAGATAACCCT
TATACAATTTACCCCGGACAGATTTTATATTTAACGAATGCTAAGTCGAGTAGTCAGTCTAAATCTACCACTTTAGATGG
AAGGAAAACGAGCTCCTCGGGTAATAATTCTAGTAAAAATGATAAAAAACAAACAGATAATCAAGTTTCTCAAACCGACG
CTAAGTCAAGTAATGATCTGAAAAAAACACTTGATCAGAAAGCTAAGCCCGCGTACCTTGTAACAAGTTCCCAACAAAAT
GTTAACTCGATCATGGTTCCACCGACTTTGACACTACCAACCAGTGTGAGTCAGTGGGAGTGGCCAGTAAGAGGGAAGTT
AATCGGGACTTACTCTGCCAATGAGCAGGGAAATAAAGGCATTAAGATCGCGGGGAATCGGGGAGATATCATCAAAGCTG
CTGCAGATGGGCGGGTGGTTTACGCAGGAAGTGCTCTTAGGGGTTACGGTAATTTAGTGATTATTAAACATAGTGACGAT
TACCTTAGTGCTTATGCTCATACGGACAAGATCTTAGTCAAAGAAAAGCAACATGTCCTCGCAGGGCAGACAGTTGCAAA
AATGGGCAGTACAGGTGCCAATCGGGTAATGTTACATTTTGAAATTCGTTACCATGGACAGTCTGTAAACCCACTTACTT
ATTTACCCAAACAATGA

Upstream 100 bases:

>100_bases
CCTTGTGTTGTGCTACTGTCTCCACTGAACAGATTGTCTTGCAACGAGGGCATTGTTTTCTCATCATAAACAGTAATACA
GCCTCACCAAGGAGTTTTTA

Downstream 100 bases:

>100_bases
TTGCTTGGGGCCTTGTTGGCAAATGGAGGATAGGAAATTGCACTAATTCAGCAGTTTAATCAGGTTTGGGAGATTTAATC
ATGAGCCGCATAAAAAGCAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSISWGAGKDFSEIAKLNQLDNP
YTIYPGQILYLTNAKSSSQSKSTTLDGRKTSSSGNNSSKNDKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQN
VNSIMVPPTLTLPTSVSQWEWPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ

Sequences:

>Translated_298_residues
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSISWGAGKDFSEIAKLNQLDNP
YTIYPGQILYLTNAKSSSQSKSTTLDGRKTSSSGNNSSKNDKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQN
VNSIMVPPTLTLPTSVSQWEWPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ
>Mature_298_residues
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSISWGAGKDFSEIAKLNQLDNP
YTIYPGQILYLTNAKSSSQSKSTTLDGRKTSSSGNNSSKNDKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQN
VNSIMVPPTLTLPTSVSQWEWPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=287, Percent_Identity=41.8118466898955, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI87082174, Length=294, Percent_Identity=39.1156462585034, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=41.3223140495868, Blast_Score=88, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32477; Mature: 32477

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCEEEECCCEEEEE
SWGAGKDFSEIAKLNQLDNPYTIYPGQILYLTNAKSSSQSKSTTLDGRKTSSSGNNSSKN
ECCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
DKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQNVNSIMVPPTLTLPTSVSQWE
CHHHHCCHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCEECCCCCCCCC
WPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCC
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCEEEECCCEEEEE
SWGAGKDFSEIAKLNQLDNPYTIYPGQILYLTNAKSSSQSKSTTLDGRKTSSSGNNSSKN
ECCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
DKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQNVNSIMVPPTLTLPTSVSQWE
CHHHHCCHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEECCCCEECCCCCCCCC
WPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCC
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]