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The map label for this gene is virA [H]

Identifier: 160876122

GI number: 160876122

Start: 3581808

End: 3583169

Strand: Reverse

Name: virA [H]

Synonym: Sbal195_3013

Alternate gene names: 160876122

Gene position: 3583169-3581808 (Counterclockwise)

Preceding gene: 160876123

Following gene: 160876121

Centisome position: 67.01

GC content: 44.35

Gene sequence:

>1362_bases
ATGACCCGAATGCTTGATCGAATCCTATTTGATGTCAGTAAGTCTCAGGTTATTGATGAGGGCGATCTCATTCAAGCATC
ACAACTTATAGTGAGTTCAATCTGTAAGGGATTACAGATCACGCGGGCGGGCATTTGGTTGTTTGGTCAAGATAATCAGA
CTATTGCTTGTTATTATTTACTCGACCACCAACAGCCGCAAGAAGCGTTAGTGCTCACTCGTGCGCAGTTTCCCCATTAC
TTCAGCTTACTCGACAATGAGCGCACTATTGTCGCTAATAAGGCGCAAACGGATCCTGCCACCAAAGAGTTTGTCGATAC
TTACCTGAAACCGAATCAGATCACCTCTATGCTGGATAGCCCCATTCGTCACCACGGCAAAATGGTGGGGATTATTTGTT
CTGAGCATCAAGGTGAGGCGAGGGAATGGACGCGGGATGAAAAGGCATTTGCTTCGGCACTGGCCGATCTCTTTGGCCGA
GCCATGAGTGCTAAAGAGATCCTCGAATACCAACAACAGCTCAAACTCATCAATACCGATTTGGAGCATCAAGTTGAACT
ACGAACAACCGAACTCGAGACGGCCCTATCGACCTTAAAATCGACCCAAAAGCACTTAATTGAAAATGAAAAAATGGCCG
CCTTAGGTAGCTTAGTTGCCGGTGTTGCTCACGAGGTGAATACGCCACTGGGTATCGCGGTAACATCCGTGACCCATTGT
TTGGATGAGTTATCGCTACTAAAAGGGTCATTCGAGAAAAACGATCTCGATGAAGATAAGTTTGTCAGTTTTATCAATAC
AATGCAGGATGGTTTATGTTTAATTGAGCGTAATCTTTCCCGCGCCGCAGAACTGGTTCATAACTTTAAACGCACTGCCG
CAGATCAATCGATATTGGAACGTGAGCGCTTTAATTTAAAGAACTATATTTTCCAAATATTTAGTTCATTAAAGCCCTTA
ATGCGTAAGAAAAACATCACTTTAAAAGTCGAACTCGATGACAATATTTTCATTGATTCCTACCCCGGCGCCATCGCTCA
GATTTTTACCAATTTAGTCGCTAACAGTTTTCGCCACGCTTTCCCTGATGATTTTGTCGGAGATAAACAGATTGTCATTG
TGGTTGAAAAGGAGGGGGCACAGATCAAGATGACTTATCAAGACAATGGCATCGGCATGTCAGATGAAGTGAAAGCTAAA
GCATTCGAGCCATTTTTTACCACGGCGCGCCAAAGTGGTGGCACAGGTTTGGGGATGTCGATTATTTATAATCTGGTCAC
CCAAAAGCTTAATGGTAATGTTTCACTCTTCTCTGCGCCGAATCAGGGGTTACGTATTGAGATGCTGATCCCTGAGCGGT
AG

Upstream 100 bases:

>100_bases
CGCAATCGGGTAAGCAGTTTGACCCCGTATTGTGTGAAGCTAGCCTAAAACTGTTAGATGCGTTTGCCTCCCTACATATC
CACATTCCGGACGAACCGCT

Downstream 100 bases:

>100_bases
CAAGGGCGAAGATTGGTGAGCGCTAGGTTCAGCAAATGCACTTGTCTTTATGGAACAGAGGATTCATTCATCTTATAGAA
GCTAAATGGCTTTTAGTGCT

Product: GAF sensor signal transduction histidine kinase

Products: NA

Alternate protein names: WHR virA [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MTRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYLLDHQQPQEALVLTRAQFPHY
FSLLDNERTIVANKAQTDPATKEFVDTYLKPNQITSMLDSPIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGR
AMSAKEILEYQQQLKLINTDLEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILERERFNLKNYIFQIFSSLKPL
MRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHAFPDDFVGDKQIVIVVEKEGAQIKMTYQDNGIGMSDEVKAK
AFEPFFTTARQSGGTGLGMSIIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPER

Sequences:

>Translated_453_residues
MTRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYLLDHQQPQEALVLTRAQFPHY
FSLLDNERTIVANKAQTDPATKEFVDTYLKPNQITSMLDSPIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGR
AMSAKEILEYQQQLKLINTDLEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILERERFNLKNYIFQIFSSLKPL
MRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHAFPDDFVGDKQIVIVVEKEGAQIKMTYQDNGIGMSDEVKAK
AFEPFFTTARQSGGTGLGMSIIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPER
>Mature_452_residues
TRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYLLDHQQPQEALVLTRAQFPHYF
SLLDNERTIVANKAQTDPATKEFVDTYLKPNQITSMLDSPIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGRA
MSAKEILEYQQQLKLINTDLEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHCL
DELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILERERFNLKNYIFQIFSSLKPLM
RKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHAFPDDFVGDKQIVIVVEKEGAQIKMTYQDNGIGMSDEVKAKA
FEPFFTTARQSGGTGLGMSIIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPER

Specific function: Activates virG, by phosphorylating it, in the presence of acetosyringone or hydroxysyringone [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=296, Percent_Identity=28.0405405405405, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI145693157, Length=240, Percent_Identity=24.5833333333333, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 50941; Mature: 50810

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS00018 EF_HAND_1 ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYL
CHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEECEEEEEECCCCEEEEEEE
LDHQQPQEALVLTRAQFPHYFSLLDNERTIVANKAQTDPATKEFVDTYLKPNQITSMLDS
ECCCCCHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHH
PIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGRAMSAKEILEYQQQLKLINTD
HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
LEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
CHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RERFNLKNYIFQIFSSLKPLMRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHA
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHC
FPDDFVGDKQIVIVVEKEGAQIKMTYQDNGIGMSDEVKAKAFEPFFTTARQSGGTGLGMS
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCHHHHHHHCCCCCCHHHH
IIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPER
HHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC
>Mature Secondary Structure 
TRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYL
HHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEECEEEEEECCCCEEEEEEE
LDHQQPQEALVLTRAQFPHYFSLLDNERTIVANKAQTDPATKEFVDTYLKPNQITSMLDS
ECCCCCHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHH
PIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGRAMSAKEILEYQQQLKLINTD
HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
LEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
CHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RERFNLKNYIFQIFSSLKPLMRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHA
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHC
FPDDFVGDKQIVIVVEKEGAQIKMTYQDNGIGMSDEVKAKAFEPFFTTARQSGGTGLGMS
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCHHHHHHHCCCCCCHHHH
IIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPER
HHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2796735; 2194232; 11743193; 11743194 [H]