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The map label for this gene is ygiD [H]

Identifier: 160876074

GI number: 160876074

Start: 3519917

End: 3520732

Strand: Reverse

Name: ygiD [H]

Synonym: Sbal195_2964

Alternate gene names: 160876074

Gene position: 3520732-3519917 (Counterclockwise)

Preceding gene: 160876075

Following gene: 160876072

Centisome position: 65.84

GC content: 50.37

Gene sequence:

>816_bases
ATGATGCAAGTTAAAGCGAGTCGTATGCCTGTGCTATTTGTGCCCCACGGTGGTGGCCCAATGCCTTTGCTAAATGATGC
CAATCATAAAGAGTTACGTGCTTTTTTAACCTCAGTGACCGCGCCCATTGAAACCCCTAAGGCGATTGTGCTGATCACCG
CCCATTGGGAAGAATCTGTGGTGACCTTGTCGAGTAGCCCTAAGCCCGGCATTTTATATGACTACTATGGTTTTCCACCC
GAAGCGTATCAGCTGACGTATCCTGCACCGGGTGAGCCAGAATTAGCGGCACAGATTGCGAATATGCTCGCGGATAAGGG
TATCGCCGCCCGCTTAGATAGCGAACGCGCATTTGATCACGGTACCTTTGTACCACTTAAGTTGATGTATCCCGAGGCGA
ATATTCCCGTAGTACAAATGTCGTTAGTCCACAGTCTCGATCCTGAAACCCATATAGCGATTGGCGAAGCCTTAGCGCCG
CTGCGGGATCAAGGGGTATTGATTGTGGGCTCAGGGATGTCGTTTCACAATATGCGGGCGTTTTTTTCAAGCGATCCCAC
GGTCCAAAGTCGCAGCGCAGAGTTTGACTATTGGCTGACGCAAACATTAACCGCAAGCGTGAACACTGCCGAGACCAAAA
CAGCACTGACTCACTGGCAAGCGGCTCCTGAGGCGCGGTTTAGTCATCCGCGGGAAGAACATTTATTGCCTCTGCATGTG
TGTTTCGGCGCTGGTCACAGTGACTCATCCCAAGCGCTACGTAACTTTAACGGCATTTTGCTAAATACTCTGATCTCAGG
CTATATCTGGCAATAA

Upstream 100 bases:

>100_bases
TTTCAGCTGCAGTTGGCGCTAAGTCGCTCCGCATTTTAAGTGATAAAAATTGAGTCTGAAGTCAGTCGTACCGATTTAAG
TTAATCAACAAGAGAAAACC

Downstream 100 bases:

>100_bases
TCTGGCAATAATCTGGCAATAATCTGATGTTGGATTGCCGTGGTCGAACATGACAGTAAACCTAAGGCTAAGCATATTTA
GCCAATAAAAAAGGTTCGTA

Product: extradiol ring-cleavage dioxygenase class III protein subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MMQVKASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVVTLSSSPKPGILYDYYGFPP
EAYQLTYPAPGEPELAAQIANMLADKGIAARLDSERAFDHGTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAP
LRDQGVLIVGSGMSFHNMRAFFSSDPTVQSRSAEFDYWLTQTLTASVNTAETKTALTHWQAAPEARFSHPREEHLLPLHV
CFGAGHSDSSQALRNFNGILLNTLISGYIWQ

Sequences:

>Translated_271_residues
MMQVKASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVVTLSSSPKPGILYDYYGFPP
EAYQLTYPAPGEPELAAQIANMLADKGIAARLDSERAFDHGTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAP
LRDQGVLIVGSGMSFHNMRAFFSSDPTVQSRSAEFDYWLTQTLTASVNTAETKTALTHWQAAPEARFSHPREEHLLPLHV
CFGAGHSDSSQALRNFNGILLNTLISGYIWQ
>Mature_271_residues
MMQVKASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVVTLSSSPKPGILYDYYGFPP
EAYQLTYPAPGEPELAAQIANMLADKGIAARLDSERAFDHGTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAP
LRDQGVLIVGSGMSFHNMRAFFSSDPTVQSRSAEFDYWLTQTLTASVNTAETKTALTHWQAAPEARFSHPREEHLLPLHV
CFGAGHSDSSQALRNFNGILLNTLISGYIWQ

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=243, Percent_Identity=34.5679012345679, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29745; Mature: 29745

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQVKASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESV
CCEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEE
VTLSSSPKPGILYDYYGFPPEAYQLTYPAPGEPELAAQIANMLADKGIAARLDSERAFDH
EEECCCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCC
GTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPLRDQGVLIVGSGMSFHNMRA
CCEEEEEEECCCCCCCEEEEEHHHHCCCCCEEEHHHHHCCCCCCCEEEEECCCCHHHHHH
FFSSDPTVQSRSAEFDYWLTQTLTASVNTAETKTALTHWQAAPEARFSHPREEHLLPLHV
HHCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHCCCHHHCEEEEEE
CFGAGHSDSSQALRNFNGILLNTLISGYIWQ
EECCCCCCHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MMQVKASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESV
CCEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEE
VTLSSSPKPGILYDYYGFPPEAYQLTYPAPGEPELAAQIANMLADKGIAARLDSERAFDH
EEECCCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCC
GTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPLRDQGVLIVGSGMSFHNMRA
CCEEEEEEECCCCCCCEEEEEHHHHCCCCCEEEHHHHHCCCCCCCEEEEECCCCHHHHHH
FFSSDPTVQSRSAEFDYWLTQTLTASVNTAETKTALTHWQAAPEARFSHPREEHLLPLHV
HHCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCHHHHCCCHHHCEEEEEE
CFGAGHSDSSQALRNFNGILLNTLISGYIWQ
EECCCCCCHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]