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The map label for this gene is ydcR [C]

Identifier: 160875598

GI number: 160875598

Start: 2937961

End: 2939319

Strand: Direct

Name: ydcR [C]

Synonym: Sbal195_2486

Alternate gene names: 160875598

Gene position: 2937961-2939319 (Clockwise)

Preceding gene: 160875595

Following gene: 160875600

Centisome position: 54.94

GC content: 48.86

Gene sequence:

>1359_bases
ATGGGTACAATCTGGACGCCAGACCTAACTGCTTTTTCAGGCCCGAAATATCAGCGCTTAGTCAGTGCGATAGAACAAGG
CATTTTGCAGAAAGTGTTAACCCAAGGCAGTAAACTGCCCCCGCAGCGCCGTTTAGCCGATGCCTTAGGCATCACTATTG
GCACTGTAACCCGCGCCTATGCATTGGCGGAACAAAGGGGTTACGTCGAAGCGCGCGTCGGTGATGGCACCTATGTCAAC
GCCTCCCCAGTACCAGAGATCGGTAACGTACAATTGAATATGGCGACCTGCCAGCAGCCACTCACAGATCAAATTAGCAC
CCTGAGTGATTGCCTCAGCCAATTAGCAAAAGACCCGACAAAGCTCAGCCAGTTACTGGGTTATCGCGCCAGTCCATTAG
ATCAACATCAACAAGTGTTTCACCAATGGCTTAACCAACGCGGCATACAACAAACGCCTGAGCAACTGATCTTTGCCCAT
GGCGGCCAGCAAGCGATTTTTGCCTGTTTGAGTGCATTTTTATCGACGGGCGATGTGCTGCTGCACGAACAATACAGTTA
TCCAGGCGTGAGAATTTGCGCTAAGCAACTGGGCGTTACCAGCATTGGAGTGCCCCTCACCCATGAAGGTGTGGATCTCG
CCCGCTTTGAGGCGTTAGTGCAAATCCATCATCCCAAGTTAGTCTATCTAACCCTGAATAATCAAAATCCTACCTGTATT
CAATACAGTGAGTCGCAGCGACAAAAACTCCTCGAATTGGCCGAGCAGTATCAGTTTTATATCATTGAAGATGATGTGAA
TTATTGTTTACCCGAAGAGTGGCATTCGCCCCTGTGGCAATTAGCAAAACAGCTGGCTATCCCACGGGTGATTTATATTT
CTAGCCTGTCCAAATTGTTTTCTGGCGGCCTAAGGCAAGGTTTTATTCTGGTGCCTGAACCACTTATCGCCCAAGTGCGA
CTCGCGATTCATAGCCAATGCTGGATGGTATCGCCGCTGAACATTGAAATAGCCTGTCAGTTGATTAAGAAAGGCCAAAT
CACTGCCGATCGCGATAGCATAGTTCGCCAACGCCAACATCTCTGTATCGCCATGGGCGAACGACTGGGATTAACCCAAA
CTTGGCGAGGACTGAACGGTTGGCTACAACTGCCAGAAGATATCAAGGCCCATCATCTCGTCACTGCGCTAGCTGCCAAA
GGCATTTTGATCCGTAATGGAGATGACTTTAATTGCCATGAAAATTTTATTCGCTTGAGCCTTGGCGGCGCCGAAAACGA
CAGTCAATTTCAACATGCGATTGACTGTATCGAGGCGACGATTCACTCCCTGGTACAAAATGCCTATTCAGTGGTGTAA

Upstream 100 bases:

>100_bases
GTATTCATATTCACCTTAAATTGTATGCATACATTTATTGACATAAACAGATGCAATAAATAATATACGGAGAATATTAG
AGATCAATGGATTTATTGTC

Downstream 100 bases:

>100_bases
TCGCGCTTAAAACCTCCGAACTCAGCCAATTTTTATGCGCCATATCAGATGAAGTTAATTCACACTAAATGGCTAATTCA
TAAAATTAGAGAGCATAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MGTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAYALAEQRGYVEARVGDGTYVN
ASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPTKLSQLLGYRASPLDQHQQVFHQWLNQRGIQQTPEQLIFAH
GGQQAIFACLSAFLSTGDVLLHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLFSGGLRQGFILVPEPLIAQVR
LAIHSQCWMVSPLNIEIACQLIKKGQITADRDSIVRQRQHLCIAMGERLGLTQTWRGLNGWLQLPEDIKAHHLVTALAAK
GILIRNGDDFNCHENFIRLSLGGAENDSQFQHAIDCIEATIHSLVQNAYSVV

Sequences:

>Translated_452_residues
MGTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAYALAEQRGYVEARVGDGTYVN
ASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPTKLSQLLGYRASPLDQHQQVFHQWLNQRGIQQTPEQLIFAH
GGQQAIFACLSAFLSTGDVLLHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLFSGGLRQGFILVPEPLIAQVR
LAIHSQCWMVSPLNIEIACQLIKKGQITADRDSIVRQRQHLCIAMGERLGLTQTWRGLNGWLQLPEDIKAHHLVTALAAK
GILIRNGDDFNCHENFIRLSLGGAENDSQFQHAIDCIEATIHSLVQNAYSVV
>Mature_451_residues
GTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAYALAEQRGYVEARVGDGTYVNA
SPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPTKLSQLLGYRASPLDQHQQVFHQWLNQRGIQQTPEQLIFAHG
GQQAIFACLSAFLSTGDVLLHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCIQ
YSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLFSGGLRQGFILVPEPLIAQVRL
AIHSQCWMVSPLNIEIACQLIKKGQITADRDSIVRQRQHLCIAMGERLGLTQTWRGLNGWLQLPEDIKAHHLVTALAAKG
ILIRNGDDFNCHENFIRLSLGGAENDSQFQHAIDCIEATIHSLVQNAYSVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=322, Percent_Identity=27.3291925465839, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI33469970, Length=322, Percent_Identity=27.3291925465839, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=23.6607142857143, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50384; Mature: 50253

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ALAEQRGYVEARVGDGTYVNASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPT
HHHHHCCCEEEEECCCCEECCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHCCHH
KLSQLLGYRASPLDQHQQVFHQWLNQRGIQQTPEQLIFAHGGQQAIFACLSAFLSTGDVL
HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEE
LHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEE
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLF
EECHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
SGGLRQGFILVPEPLIAQVRLAIHSQCWMVSPLNIEIACQLIKKGQITADRDSIVRQRQH
CCCCCCCEEECCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
LCIAMGERLGLTQTWRGLNGWLQLPEDIKAHHLVTALAAKGILIRNGDDFNCHENFIRLS
HHHHHHHHCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEE
LGGAENDSQFQHAIDCIEATIHSLVQNAYSVV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ALAEQRGYVEARVGDGTYVNASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPT
HHHHHCCCEEEEECCCCEECCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHCCHH
KLSQLLGYRASPLDQHQQVFHQWLNQRGIQQTPEQLIFAHGGQQAIFACLSAFLSTGDVL
HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEE
LHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEE
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLF
EECHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
SGGLRQGFILVPEPLIAQVRLAIHSQCWMVSPLNIEIACQLIKKGQITADRDSIVRQRQH
CCCCCCCEEECCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
LCIAMGERLGLTQTWRGLNGWLQLPEDIKAHHLVTALAAKGILIRNGDDFNCHENFIRLS
HHHHHHHHCCCHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEE
LGGAENDSQFQHAIDCIEATIHSLVQNAYSVV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]