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The map label for this gene is yciR [C]

Identifier: 160875279

GI number: 160875279

Start: 2573024

End: 2575207

Strand: Direct

Name: yciR [C]

Synonym: Sbal195_2166

Alternate gene names: 160875279

Gene position: 2573024-2575207 (Clockwise)

Preceding gene: 160875278

Following gene: 160875282

Centisome position: 48.12

GC content: 47.39

Gene sequence:

>2184_bases
GTGAAGCGACGTCAGCATCAGCATTTATTGGAGTCTTTGGTTCAGTCAACTGCAAAACAGCAGGGCGATTTCACCAAGAC
AGCAGAGTTAGCCACAGAGTTGTTGTGCCAGAATTTAGCGGTTTCTTTGGTGTCAGTGTGGACGTTTTCAGCTGATCAAC
AAACCCAAACACTCGTTGCACAATTTGGTTCTATGATGTTGCAAGACATTCATAGGCCTAAACTATTACAAGCTTGTCCC
CGTTATGTGCACGAGCTTAAAACCCTGCGCCATATCGATGCTGGCAATACGCTGACCGATCCCCGTTTAAGTGAATTGGC
AGAGTGCTACTTTATCCCGCGGCACATCAATTCGAGTCTCGACATCGCCATTCGCATCAATGGTTGTCTGGAAGGTGTGC
TCTGCATCGAGCGGGCGCAATTCACCCCTCACTGGCACGACAGCGAAATCCACCTCGCGTGCCAGATGGCCGACCAATTA
GCTCTGACCTTAGCGACAAAACATAGCTACGACAAAGAAGAAAGACTGAGCTTGTTTCGCTGTGCGACTGAGCAGTCTCG
GCAGATCAGTATGCTCATAAATTTGCATACTGAAAAAGTCGAGTATGTGAATCAGGCGCACAGTGAAATCACTGGCATGC
CCCGTGAGCAGATAATCGGCGCAAATATCCGTGAATTGGCTTTTTTTAAGCAGCATGCCCAATTAGCCGAGCAAACCCTA
GCGCAGATTTTTAGGGGCGAAATTGCCAAAGGCGAAGCGCAGTTTAGCCGTGCCGATGGTAGTCGTTATTGGCTGACATA
TGTGCTGAGTCAATTTATTACCGATCGCGGCAATCATTATGCCTTGGTCTCGTGTGAGGAAAATACCGATGAGCACAACT
ACAAATCAGAGCTTGAACGCCTCGCTTGGCGCTGTGGATTAACGGGGCTACATAACCGTACCCACTTTAATCGAGTGCTT
GAACGTACCAATAAGGGACTGTTGTTATTAGTCGATCTGGTTGGATTTAAACGGTTTAACGATACCTATGGGCATGAGAA
TGGCGATAGCTTATTGATTGAAATCGCCCGCCGTTTGAAACATTTCTCCGAGATCAATAAAGCCACCGAAATTGCCCGTG
TCGGCAGCGATGAATTTGCCGTGCTGCTGACCGATGATAACGCGGTATACGATCTCGATTATTTTAGTACGCGTCTGTAT
CAGCATCTGGCTATGCCTATCTTAATCGGTCGCGAACAAGTCGAGCCTAAGCCTGCCTTAGCTGTGGTTGATATCGCCTC
GGTGGCGAGTTTGTTTGCTCCGTTAACCTGTGCCGATATTGCCGTTCAGTATGCTAAAAAGAAAAAGGGCACAGCAATCC
AAGTGTTTAACAGCACTTTATTGAGCGCATTTAAAGAAGATGCACAGATAGAGCGCGATTTACACAGTGCCATCCGTGGC
CGTCAGTTTGAGCTTTATTATCAGCCACTGAGGGATTTGGAGCAGAATACCTATATTGGCGCTGAAGCTTTAATCCGTTG
GCATCACCCTAAAAGAGGCGTGTTATTTCCCGCATCTTTTATCGATATTGCCGAGCAATCGGGGATGATTAATTCCATCG
GCAGCTGGGTGTTAGAGGCCGCATGTCGCCAGTTGAACCTGTGGCAACACCATAACGCGGACATGACGATGCACGTGAAT
GTGTCGGCCCGTCAGTTTTTCAGTGGCAATTTATTCGAGCAGGTGTGGCAGCTATTAACTCGTTATCGATTGAAACCTAA
GACGTTAATTTTAGAAATCACTGAAACTGAGTTGATGGGCGACATTCGCCATGCGACCTTGTTATGCCAAGAATTGGCTG
AATTAGGCGTAGGACTTGCGATTGATGATTTTGGTACGGGTTACAGCTCTATGCGTTATTTGAAGCAGTTCCCGATCAGT
AAACTCAAAATTGATCGGTCGTTTATTTCAGATCTCACTGTGAGTCGTGAAAGCCGCGAAATTGTCTCAGCCATTATCGC
CATGGCGAGTGCTTTGAATATCTCCTTGACGGCAGAAGGGGTTGAAACCCTTGAGCAAGAAGCCTTTTTAGCGAAAAGCT
TTTGCCATCAGGCGCAGGGTTATCTCTATAGCCCCGCATTACGGGAGCCTGAGTTTGCGCAATTTATCTTGTCGGCCAAA
AGCCCTTCGGTCTTGACCCACTAA

Upstream 100 bases:

>100_bases
CCAAATAAGAATAATTCAATCAGCTTAATTGCACATTTCAAGGTACGTTTGCGCGTAGCAAAGACCTTTAGCCCAACACG
AAGTTTTGTAGGGAATCAGC

Downstream 100 bases:

>100_bases
GCAGGTGTGAGCAGCTTTTAAACCGCTGTTTTCGATAACTCGCGATGACTCTTGATAACTTTTGATAAAGTAAGGGCAGG
TAAGATTGCTAACTTAGATT

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MKRRQHQHLLESLVQSTAKQQGDFTKTAELATELLCQNLAVSLVSVWTFSADQQTQTLVAQFGSMMLQDIHRPKLLQACP
RYVHELKTLRHIDAGNTLTDPRLSELAECYFIPRHINSSLDIAIRINGCLEGVLCIERAQFTPHWHDSEIHLACQMADQL
ALTLATKHSYDKEERLSLFRCATEQSRQISMLINLHTEKVEYVNQAHSEITGMPREQIIGANIRELAFFKQHAQLAEQTL
AQIFRGEIAKGEAQFSRADGSRYWLTYVLSQFITDRGNHYALVSCEENTDEHNYKSELERLAWRCGLTGLHNRTHFNRVL
ERTNKGLLLLVDLVGFKRFNDTYGHENGDSLLIEIARRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLY
QHLAMPILIGREQVEPKPALAVVDIASVASLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
RQFELYYQPLRDLEQNTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEAACRQLNLWQHHNADMTMHVN
VSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KLKIDRSFISDLTVSRESREIVSAIIAMASALNISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFILSAK
SPSVLTH

Sequences:

>Translated_727_residues
MKRRQHQHLLESLVQSTAKQQGDFTKTAELATELLCQNLAVSLVSVWTFSADQQTQTLVAQFGSMMLQDIHRPKLLQACP
RYVHELKTLRHIDAGNTLTDPRLSELAECYFIPRHINSSLDIAIRINGCLEGVLCIERAQFTPHWHDSEIHLACQMADQL
ALTLATKHSYDKEERLSLFRCATEQSRQISMLINLHTEKVEYVNQAHSEITGMPREQIIGANIRELAFFKQHAQLAEQTL
AQIFRGEIAKGEAQFSRADGSRYWLTYVLSQFITDRGNHYALVSCEENTDEHNYKSELERLAWRCGLTGLHNRTHFNRVL
ERTNKGLLLLVDLVGFKRFNDTYGHENGDSLLIEIARRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLY
QHLAMPILIGREQVEPKPALAVVDIASVASLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
RQFELYYQPLRDLEQNTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEAACRQLNLWQHHNADMTMHVN
VSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KLKIDRSFISDLTVSRESREIVSAIIAMASALNISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFILSAK
SPSVLTH
>Mature_727_residues
MKRRQHQHLLESLVQSTAKQQGDFTKTAELATELLCQNLAVSLVSVWTFSADQQTQTLVAQFGSMMLQDIHRPKLLQACP
RYVHELKTLRHIDAGNTLTDPRLSELAECYFIPRHINSSLDIAIRINGCLEGVLCIERAQFTPHWHDSEIHLACQMADQL
ALTLATKHSYDKEERLSLFRCATEQSRQISMLINLHTEKVEYVNQAHSEITGMPREQIIGANIRELAFFKQHAQLAEQTL
AQIFRGEIAKGEAQFSRADGSRYWLTYVLSQFITDRGNHYALVSCEENTDEHNYKSELERLAWRCGLTGLHNRTHFNRVL
ERTNKGLLLLVDLVGFKRFNDTYGHENGDSLLIEIARRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLY
QHLAMPILIGREQVEPKPALAVVDIASVASLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
RQFELYYQPLRDLEQNTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEAACRQLNLWQHHNADMTMHVN
VSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KLKIDRSFISDLTVSRESREIVSAIIAMASALNISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFILSAK
SPSVLTH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=532, Percent_Identity=28.7593984962406, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87081921, Length=556, Percent_Identity=28.9568345323741, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=29.1169451073986, Blast_Score=179, Evalue=5e-46,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=35.3658536585366, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=31.8181818181818, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=32.2448979591837, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=33.59375, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=264, Percent_Identity=31.0606060606061, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=32.5396825396825, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=32.8, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=32.0987654320988, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=31.1926605504587, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=29.3785310734463, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=30.0813008130081, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1788381, Length=213, Percent_Identity=28.169014084507, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82602; Mature: 82602

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRQHQHLLESLVQSTAKQQGDFTKTAELATELLCQNLAVSLVSVWTFSADQQTQTLVA
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QFGSMMLQDIHRPKLLQACPRYVHELKTLRHIDAGNTLTDPRLSELAECYFIPRHINSSL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
DIAIRINGCLEGVLCIERAQFTPHWHDSEIHLACQMADQLALTLATKHSYDKEERLSLFR
EEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
CATEQSRQISMLINLHTEKVEYVNQAHSEITGMPREQIIGANIRELAFFKQHAQLAEQTL
HHHHCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
AQIFRGEIAKGEAQFSRADGSRYWLTYVLSQFITDRGNHYALVSCEENTDEHNYKSELER
HHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH
LAWRCGLTGLHNRTHFNRVLERTNKGLLLLVDLVGFKRFNDTYGHENGDSLLIEIARRLK
HHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHH
HFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKPAL
HHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AVVDIASVASLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
RQFELYYQPLRDLEQNTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEA
CEEEHHHHHHHHHHHCCCCCHHHHHEECCCCCCEECCHHHHHHHHHCCCHHHHHHHHHHH
ACRQLNLWQHHNADMTMHVNVSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMG
HHHHCCHHHCCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
DIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTVSRESRE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH
IVSAIIAMASALNISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFILSAK
HHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCC
SPSVLTH
CCCCCCC
>Mature Secondary Structure
MKRRQHQHLLESLVQSTAKQQGDFTKTAELATELLCQNLAVSLVSVWTFSADQQTQTLVA
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QFGSMMLQDIHRPKLLQACPRYVHELKTLRHIDAGNTLTDPRLSELAECYFIPRHINSSL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
DIAIRINGCLEGVLCIERAQFTPHWHDSEIHLACQMADQLALTLATKHSYDKEERLSLFR
EEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
CATEQSRQISMLINLHTEKVEYVNQAHSEITGMPREQIIGANIRELAFFKQHAQLAEQTL
HHHHCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
AQIFRGEIAKGEAQFSRADGSRYWLTYVLSQFITDRGNHYALVSCEENTDEHNYKSELER
HHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH
LAWRCGLTGLHNRTHFNRVLERTNKGLLLLVDLVGFKRFNDTYGHENGDSLLIEIARRLK
HHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHH
HFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKPAL
HHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AVVDIASVASLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
RQFELYYQPLRDLEQNTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEA
CEEEHHHHHHHHHHHCCCCCHHHHHEECCCCCCEECCHHHHHHHHHCCCHHHHHHHHHHH
ACRQLNLWQHHNADMTMHVNVSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMG
HHHHCCHHHCCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
DIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTVSRESRE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHH
IVSAIIAMASALNISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFILSAK
HHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHCC
SPSVLTH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]