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The map label for this gene is rnfE

Identifier: 160875220

GI number: 160875220

Start: 2516285

End: 2516983

Strand: Reverse

Name: rnfE

Synonym: Sbal195_2107

Alternate gene names: 160875220

Gene position: 2516983-2516285 (Counterclockwise)

Preceding gene: 160875221

Following gene: 160875219

Centisome position: 47.07

GC content: 50.07

Gene sequence:

>699_bases
ATGACTAATTATCGCGAAATTGCTTGGCAAGGTCTGTGGAAGAATAACCCTGGCCTAGTACAACTGTTAGGCTTGTGCCC
CCTGCTTGCGGTCACAGCGACAATCACGAACGCCCTTGGCCTTGGCCTAGCGACTATGTTGGTGCTGATTGGCTCTAACA
TTTTGGTGTCGCTGGTGCGCGACTATGTGCCCAAAGAAATTCGTATTCCAGTATTTGTGATGATCATCGCCGCGCTAGTG
ACCACAGTGCAACTGCTTATCAATGCCTATGCCTACGGTCTGTATTTATCCCTTGGGATCTTCCTGCCGTTGATTGTGAC
CAACTGCATCATTATCGGTCGCGCCGAAGCCTTTGCCTCGCGCAATAACGCCTTTAGCGCCGCCTTTGATGGCTTAATGA
TGGGACTCGGTTTTACCTTAGTGCTTACAGTACTTGGCGCAACGCGGGAAATATTAGGTCAAGGCACACTGTTTGATGGC
GCCGATCAACTGCTCGGCCCGTGGGCGAAATCCTTAACCATCCATTTATGGCAAGTCGATACTCCCTTCCTGCTTGCTAT
GCTGCCACCTGGCGCATTTATCGTCATGGGATTATTGATTGCATTGAAGAATGTGATTGATAAAAAAGTGAAAGAACGCC
AACCTCAAGTCGCTGCAGAACCCAGTGTCACCCGCGCGCGCATCACTAAGGTTGGTTAG

Upstream 100 bases:

>100_bases
ACCCCGCGCGCTTATGTCAAAGCAGTCAAAAACGCAGTATGGTATTTCAACAATAACCAAGCGCAAATTTTCAGTCTGCC
GCTAAATTGTGAGGCCAACC

Downstream 100 bases:

>100_bases
GCTTTCGACATAAAGGCCTAATCCCAGCATAGTACAGAGTATGGTGTTCAACGCTTAATGTGCGCCTAGCGCACATTAAG
CGACTGGAATTAAACATAAT

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGLATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALV
TTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLTVLGATREILGQGTLFDG
ADQLLGPWAKSLTIHLWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKVKERQPQVAAEPSVTRARITKVG

Sequences:

>Translated_232_residues
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGLATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALV
TTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLTVLGATREILGQGTLFDG
ADQLLGPWAKSLTIHLWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKVKERQPQVAAEPSVTRARITKVG
>Mature_231_residues
TNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGLATMLVLIGSNILVSLVRDYVPKEIRIPVFVMIIAALVT
TVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFASRNNAFSAAFDGLMMGLGFTLVLTVLGATREILGQGTLFDGA
DQLLGPWAKSLTIHLWQVDTPFLLAMLPPGAFIVMGLLIALKNVIDKKVKERQPQVAAEPSVTRARITKVG

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787919, Length=212, Percent_Identity=61.7924528301887, Blast_Score=253, Evalue=8e-69,
Organism=Escherichia coli, GI1787914, Length=156, Percent_Identity=33.974358974359, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFE_SHEB2 (B8E553)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002358200.1
- GeneID:   7086405
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_2278
- HOGENOM:   HBG624915
- OMA:   VTNCVII
- ProtClustDB:   PRK12405
- GO:   GO:0006810
- HAMAP:   MF_00478
- InterPro:   IPR003667
- InterPro:   IPR010968
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01948

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 25029; Mature: 24898

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1cbb1624)-; HASH(0x1aa4b5f4)-; HASH(0x1ed5dd10)-; HASH(0x1ecb38c8)-; HASH(0x1ec252dc)-; HASH(0x1ee09cb0)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGLATMLVLIGSNILVSLVR
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
DYVPKEIRIPVFVMIIAALVTTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNAFSAAFDGLMMGLGFTLVLTVLGATREILGQGTLFDGADQLLGPWAKSLTIHLWQVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECC
TPFLLAMLPPGAFIVMGLLIALKNVIDKKVKERQPQVAAEPSVTRARITKVG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCH
>Mature Secondary Structure 
TNYREIAWQGLWKNNPGLVQLLGLCPLLAVTATITNALGLGLATMLVLIGSNILVSLVR
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
DYVPKEIRIPVFVMIIAALVTTVQLLINAYAYGLYLSLGIFLPLIVTNCIIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNAFSAAFDGLMMGLGFTLVLTVLGATREILGQGTLFDGADQLLGPWAKSLTIHLWQVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECC
TPFLLAMLPPGAFIVMGLLIALKNVIDKKVKERQPQVAAEPSVTRARITKVG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA