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The map label for this gene is recD [H]

Identifier: 160875206

GI number: 160875206

Start: 2492994

End: 2495216

Strand: Reverse

Name: recD [H]

Synonym: Sbal195_2093

Alternate gene names: 160875206

Gene position: 2495216-2492994 (Counterclockwise)

Preceding gene: 160875207

Following gene: 160875204

Centisome position: 46.66

GC content: 48.99

Gene sequence:

>2223_bases
ATGATGCGCTCAACCCAAGGGCTAAATGCACATTCACTCACAGCCGCGAAATGGATAGATCATGGCGCAATTCAGCTTAG
CGCGCCGCTGCCAGAGCTGTTAAAACAGTGGGAGCAAGAACGATTGCTCACACCGCTCGATCGGCATTTCGCACTCGAGA
TGAGCCACTTGCATCCAAGTGACAGCCAACATCCCTTGTTTATTTTGCTGTGTGCGCTATTAAGCCAGCAATTATCTTCA
CAGCACAGTTGCCTAGTGCTCGCCCATATCGTGCCGCTTAATCCTATGGCCGAGCAAAGTAGCCATTGTAAAATCAGCTT
AAGCCTAGAAGCACTCACCGAGACCTTGCAAACCTTTGATGCAGTCGGTCAAGCGGGCAGTAACAAACCACTTATTTTTG
ATAATGGCAGACTCTATTTGCAGCGTTATCATCAATTTGAAACCTCAGTGGCCGCTTCGTTAATCCGCTTATCAGGTAGC
GTATCTAAACACTTCTCTGAAGAGGTAAACCATCAAGAGCAAACTCAAACAGCTAAGTTGCGGTCACTACTAGATCAACT
GTTCCCCGCCACTGTCAGCGATCCCCATTCACTCACTACCAATGTACTCACTACCAGTGTAATCACTAAAAGTGATAGCA
CACAAAGCACAGCACCCATTGATTGGCAAAAGGTTGCCACGGCCACTGCGCTGGGTAAAAAACTGGCGGTGATCACTGGT
GGCCCAGGTACGGGCAAAACCACCACTGTGACTAAGCTTTTGTTATTGCTACAAATGGAATCACAGCAGGAAATTCGTTT
AGTCGCGCCAACGGGAAAAGCGGCGGCTCGGTTAAGCGAATCAATCAAAGCCTCAAAAGCGCGTCTGGCGAAGGAACTCA
GCGCCCATACTGATGTTGTTGATGAAGCTCGCAATAGAAATAATCAAGACTTTTTAACGGCACTGGGGCGCATTCCAGAG
GAAGCATCAACCTTACACAGACTGCTTGGAGTGATCCCCAATTCGCCGCACTTTCGCCACCATCAAGGTAATCCGCTTAG
GCTCGACTTATTAATCGTCGACGAAGCCTCTATGGTCGATTTGCCCATGATGTATAAGCTGCTGAGCGCACTGCCTGAGC
ACGCCAGTTTGATTTTACTCGGCGATCAGGATCAACTCGCCTCGGTTGAAGCCGGCGCTGTGCTCGCCGATATTTGTGCG
GGCCTGAAAATGCCAGTAGAACCCAATAACCTTGCGCAAAATAACACAGCATCCAACAACTCTGCTCTGTGGCAAATGCG
CTATTCCAAGGAGCAAGCCGAGCGTCTGAGTGCGTTAACGGGGTTTGAGTTAACACCCTATATCAGCGACGCGCCTAAAC
TTGGCGATAGCTTGTGTATGCTAATGCACAGCCACAGATTTAAAGGCGATGCAGGGATTGGACAACTTGCGAGCGCCGTT
AATCGCGCGGATCTTCAAGGTATTTTGCAAGTATGGCAACAGGGACCCGCAGAATTAAGCTGGTTAGAACACAGCATGGC
TTTAAGCCAAACCCAAGCCAAAGTGAGCGAGCCTGCTAATAATATGGGACTCAATTTACTGCTAGAGCAAGCCTGCCAGC
AATATGGTATTTATCTCAGCGCCTTGAATAGCGATGAAAATCATAGTGATTTAAGTAAGCGTCCAAGCACAGCTGAGATC
ATAGAAAGCTTTAACCAGTACCGCATTTTATGCGCTATGCGCTCGGGCGATTATGGGGTTGAAGGCATCAATCAGTATGT
AACTCAAGCACTGGCCAATGCCAAGCTGATTAAACCGCTACAGGAGTTTTATCTGGGTCGGCCGATTATCATCCAAAGCA
ATGACTATAACTTAGGCCTGTTTAACGGTGATATCGGATTGATTTTGCAGGATGAAGATAAACCCGAACGCTTAATGGCG
CACTTTATCAAGGCCGATGGCAGTCTGTTAAAAGTCTTGCCAGCACGTTTACCCAGCCATGAAACCTGTTACGCCATGAC
GGTACACAAAAGCCAAGGCAGTGAGTTCAGTCGGGTGGCCTTAGTGCTGCCACCTAACCCCAGCTTAGCGCAGTGGCAAC
TGCTAACCAAAGAGTTGGTCTATACCGCCATCACCCGCGCTAAAGTGCATTTTACCTGCTTAGGCACCCAGCACGTATTC
GAGCGGGCCAGTAGCCAAGCAACCCAACGCGCATCGGGTCTTGCAGACAGGCTTTGGGGTTAA

Upstream 100 bases:

>100_bases
ACAAGCCGCCGAAGGCACTTATTCTCGCGCTGGATTCACTATTTAATGACAATTTATTTCACAGCAGATTAGCTGGTGCA
ATCGATACAGGAGTCACGGC

Downstream 100 bases:

>100_bases
GTTAGTTCGTTTAGCTCAAGACTAAGCTGTAACGGAAGGAGGTTTTGGTAAACCCTATGCTTTCATAGTATTGCTGAGTG
GCGATGCGCTGGGTCGATGT

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MMRSTQGLNAHSLTAAKWIDHGAIQLSAPLPELLKQWEQERLLTPLDRHFALEMSHLHPSDSQHPLFILLCALLSQQLSS
QHSCLVLAHIVPLNPMAEQSSHCKISLSLEALTETLQTFDAVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGS
VSKHFSEEVNHQEQTQTAKLRSLLDQLFPATVSDPHSLTTNVLTTSVITKSDSTQSTAPIDWQKVATATALGKKLAVITG
GPGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVVDEARNRNNQDFLTALGRIPE
EASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICA
GLKMPVEPNNLAQNNTASNNSALWQMRYSKEQAERLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAV
NRADLQGILQVWQQGPAELSWLEHSMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLSALNSDENHSDLSKRPSTAEI
IESFNQYRILCAMRSGDYGVEGINQYVTQALANAKLIKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMA
HFIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVF
ERASSQATQRASGLADRLWG

Sequences:

>Translated_740_residues
MMRSTQGLNAHSLTAAKWIDHGAIQLSAPLPELLKQWEQERLLTPLDRHFALEMSHLHPSDSQHPLFILLCALLSQQLSS
QHSCLVLAHIVPLNPMAEQSSHCKISLSLEALTETLQTFDAVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGS
VSKHFSEEVNHQEQTQTAKLRSLLDQLFPATVSDPHSLTTNVLTTSVITKSDSTQSTAPIDWQKVATATALGKKLAVITG
GPGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVVDEARNRNNQDFLTALGRIPE
EASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICA
GLKMPVEPNNLAQNNTASNNSALWQMRYSKEQAERLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAV
NRADLQGILQVWQQGPAELSWLEHSMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLSALNSDENHSDLSKRPSTAEI
IESFNQYRILCAMRSGDYGVEGINQYVTQALANAKLIKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMA
HFIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVF
ERASSQATQRASGLADRLWG
>Mature_740_residues
MMRSTQGLNAHSLTAAKWIDHGAIQLSAPLPELLKQWEQERLLTPLDRHFALEMSHLHPSDSQHPLFILLCALLSQQLSS
QHSCLVLAHIVPLNPMAEQSSHCKISLSLEALTETLQTFDAVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGS
VSKHFSEEVNHQEQTQTAKLRSLLDQLFPATVSDPHSLTTNVLTTSVITKSDSTQSTAPIDWQKVATATALGKKLAVITG
GPGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVVDEARNRNNQDFLTALGRIPE
EASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICA
GLKMPVEPNNLAQNNTASNNSALWQMRYSKEQAERLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAV
NRADLQGILQVWQQGPAELSWLEHSMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLSALNSDENHSDLSKRPSTAEI
IESFNQYRILCAMRSGDYGVEGINQYVTQALANAKLIKPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMA
HFIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVF
ERASSQATQRASGLADRLWG

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=705, Percent_Identity=39.8581560283688, Blast_Score=395, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 81271; Mature: 81271

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRSTQGLNAHSLTAAKWIDHGAIQLSAPLPELLKQWEQERLLTPLDRHFALEMSHLHPS
CCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHEEEECCCCCC
DSQHPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQSSHCKISLSLEALTETLQTFD
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHH
AVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGSVSKHFSEEVNHQEQTQTAKL
HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
RSLLDQLFPATVSDPHSLTTNVLTTSVITKSDSTQSTAPIDWQKVATATALGKKLAVITG
HHHHHHHCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEEC
GPGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVV
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEARNRNNQDFLTALGRIPEEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVD
HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
LPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAGLKMPVEPNNLAQNNTASNN
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
SALWQMRYSKEQAERLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAV
CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
NRADLQGILQVWQQGPAELSWLEHSMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEE
ALNSDENHSDLSKRPSTAEIIESFNQYRILCAMRSGDYGVEGINQYVTQALANAKLIKPL
EECCCCCCCHHHCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
QEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSH
HHHHCCCCEEEECCCCEEEEEECCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
ETCYAMTVHKSQGSEFSRVALVLPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVF
CCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHH
ERASSQATQRASGLADRLWG
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMRSTQGLNAHSLTAAKWIDHGAIQLSAPLPELLKQWEQERLLTPLDRHFALEMSHLHPS
CCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHEEEECCCCCC
DSQHPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQSSHCKISLSLEALTETLQTFD
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHH
AVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIRLSGSVSKHFSEEVNHQEQTQTAKL
HHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
RSLLDQLFPATVSDPHSLTTNVLTTSVITKSDSTQSTAPIDWQKVATATALGKKLAVITG
HHHHHHHCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEEC
GPGTGKTTTVTKLLLLLQMESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVV
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEARNRNNQDFLTALGRIPEEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVD
HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
LPMMYKLLSALPEHASLILLGDQDQLASVEAGAVLADICAGLKMPVEPNNLAQNNTASNN
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
SALWQMRYSKEQAERLSALTGFELTPYISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAV
CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
NRADLQGILQVWQQGPAELSWLEHSMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEE
ALNSDENHSDLSKRPSTAEIIESFNQYRILCAMRSGDYGVEGINQYVTQALANAKLIKPL
EECCCCCCCHHHCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
QEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSH
HHHHCCCCEEEECCCCEEEEEECCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
ETCYAMTVHKSQGSEFSRVALVLPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVF
CCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHH
ERASSQATQRASGLADRLWG
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]