| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is dctS [H]
Identifier: 160873592
GI number: 160873592
Start: 536107
End: 537918
Strand: Direct
Name: dctS [H]
Synonym: Sbal195_0468
Alternate gene names: 160873592
Gene position: 536107-537918 (Clockwise)
Preceding gene: 160873579
Following gene: 160873595
Centisome position: 10.03
GC content: 50.94
Gene sequence:
>1812_bases ATGGCGACGGGCTCTTGGTGTAAAGCGGTAGTGATGGGATTATGCCTAAGTGTCATTGGGCTCAATCAGTCCTATGCCGA TGACGTGCCACAGGTGAACCACTTTAAAGTCGGAGTGTTGGCCAACCACGGCGTATTACAGGCCAAGCAGCGATGGCAAC CTATGATGGATTACCTGACTGAACAAGTGCCCAATAGCCATTTTGAAGTGGTGCCCGTTGACTTTAATGGTATGCGTAGC CAGTTACTCGGCCATGATTTGCAGTTTATCGTCACCAACCCCGGGCAATATCTGCATCTAAGCAATAACTTTCCGCTGTC TTGGCTCGCGACGATGAAAAGCCGCAAGCATCAGGGCAGTACTTTTACCATAGGCGCGACTATTATTGTCCGCGCCGATA GCCCTATCCGCACTCTGCAGGATTTGCGCGGGCGCAATGTGGTCGCCAGTGATCCGCAGGCATTAGGCGGGTATCAGGCG GCCATGGGGTTACTGCATAAAATGGGCTTTTTACCCGAACAGTTTTTTGGGCAAGTGCGCTTCCTCGGTTTTCCATTGGA GCCGCTTGTCTATCAAGTCCGTGACGGCAGCGCCGATGCCGCCATCGCGCCTTTTTGCACTTTAGAGGAAATGATCGCAA CGGGTCTTGTTAATCAGGCCGATTATCGGGTGATCCACCCGACTAAACCGGCAGGATATGATTGTGAGGTGAGCACTCAG TTATACCCCAACTGGTCATTCGCCGCGGCGGATACGGTTGCCCCTAAGCTGACGATGGCGATCACCCGCGCCTTATTTGA TTTACCCGCCGACCATGTCGCTGCCATTACTGCCGATACTTTGGGCTGGACGGCGCCAGTCAGCCAGTTGAAAGTGATTG AGTTATTTAAGGAATTACAGCTGCAAGGTGCGTCGCCGCCACTCTATCAAACTGTATACAAATGGATGGCGAAAAATAAA GAGTGGGGCGGTGTGCTGCTATTAATCTTCATTATTTCGACTATTTATCACCTGTGGCTTGAATATAAGTTTCGCCAGAA AAGCGAGTTCTTACTCAATACTGAGCGCCAATTAAAGGACAAGGCATTACAGCTTGAGCGGCTGCAAAGTGCGGCAATTC TGGGGGAAATTGGCGCTGGCCTTGCCCATGAACTCAATCAACCCATAGCCGCCATTACCCAATACAGCGAAGGCGCCATG CTGCAATTGGAAAGGCTTGGGCAAGATAATCCCGAACTTTATGATGTGCTTGGGAAAATTAATGCCCAGTCGATTCGCGC GGGTGCGGTTGTGCACCGTATTCGCGGTTTACTCAAGCGGCGTCAGGCCAAGACTGAGCCTTTAGATATCGTGCTGGTGG TGAAGGAGGCGTTAGCTTTACTGCGGCGCGAGTTAGATCGGGCCAATGTGCAAGTGAATGTGCGAGTGCAGGGGGAGCCC TTTGAGCTGATGGGGGATAGCGTTGGCTTAAGTCAAATGTGGGTCAATCTTGTGAAAAATAGTTTAGATGCGCTAGAGGC CTGCGGCGATAATCGGGTGCGGCAATTATGGATCGATATCTATTTTCAACCGCATGAAATCAAAGTATTAGTGATTGATA ATGGCGAAGGGCTTCAGGGGCAGGCGAGTGACTTAATGGCATCTTTTGCCTCAACCAAAGATGCGGGATTGGGGCTTGGT TTAGCTATCTGTAAGGATGTGGTCAGTCGCCACCATGGCAGCATTCAAATCGAAAACTGCCAGCAATCTACGCAAGCCTT ATTGCCGTGGCAACAGGGTTGTGTGGTGACAGTCGTACTTCCCAAGGGATAG
Upstream 100 bases:
>100_bases ATCTTAGGGCAGAAACCAGAGTTTGGCGGCATTTCACAGCTTGATTTTTATCTGCGAGTTAAAGTCGTTTAATAGCATAT AAGACAGGGTAATAGCGGCG
Downstream 100 bases:
>100_bases GGTTATACACTTATGAGTAACCCTTAATGTGCGCATTAGCGGAGCATCCGACAGCCTTTATTGGTTAGCGGTTAATATTA ATAAAAGCATCATTTTCATA
Product: histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MATGSWCKAVVMGLCLSVIGLNQSYADDVPQVNHFKVGVLANHGVLQAKQRWQPMMDYLTEQVPNSHFEVVPVDFNGMRS QLLGHDLQFIVTNPGQYLHLSNNFPLSWLATMKSRKHQGSTFTIGATIIVRADSPIRTLQDLRGRNVVASDPQALGGYQA AMGLLHKMGFLPEQFFGQVRFLGFPLEPLVYQVRDGSADAAIAPFCTLEEMIATGLVNQADYRVIHPTKPAGYDCEVSTQ LYPNWSFAAADTVAPKLTMAITRALFDLPADHVAAITADTLGWTAPVSQLKVIELFKELQLQGASPPLYQTVYKWMAKNK EWGGVLLLIFIISTIYHLWLEYKFRQKSEFLLNTERQLKDKALQLERLQSAAILGEIGAGLAHELNQPIAAITQYSEGAM LQLERLGQDNPELYDVLGKINAQSIRAGAVVHRIRGLLKRRQAKTEPLDIVLVVKEALALLRRELDRANVQVNVRVQGEP FELMGDSVGLSQMWVNLVKNSLDALEACGDNRVRQLWIDIYFQPHEIKVLVIDNGEGLQGQASDLMASFASTKDAGLGLG LAICKDVVSRHHGSIQIENCQQSTQALLPWQQGCVVTVVLPKG
Sequences:
>Translated_603_residues MATGSWCKAVVMGLCLSVIGLNQSYADDVPQVNHFKVGVLANHGVLQAKQRWQPMMDYLTEQVPNSHFEVVPVDFNGMRS QLLGHDLQFIVTNPGQYLHLSNNFPLSWLATMKSRKHQGSTFTIGATIIVRADSPIRTLQDLRGRNVVASDPQALGGYQA AMGLLHKMGFLPEQFFGQVRFLGFPLEPLVYQVRDGSADAAIAPFCTLEEMIATGLVNQADYRVIHPTKPAGYDCEVSTQ LYPNWSFAAADTVAPKLTMAITRALFDLPADHVAAITADTLGWTAPVSQLKVIELFKELQLQGASPPLYQTVYKWMAKNK EWGGVLLLIFIISTIYHLWLEYKFRQKSEFLLNTERQLKDKALQLERLQSAAILGEIGAGLAHELNQPIAAITQYSEGAM LQLERLGQDNPELYDVLGKINAQSIRAGAVVHRIRGLLKRRQAKTEPLDIVLVVKEALALLRRELDRANVQVNVRVQGEP FELMGDSVGLSQMWVNLVKNSLDALEACGDNRVRQLWIDIYFQPHEIKVLVIDNGEGLQGQASDLMASFASTKDAGLGLG LAICKDVVSRHHGSIQIENCQQSTQALLPWQQGCVVTVVLPKG >Mature_602_residues ATGSWCKAVVMGLCLSVIGLNQSYADDVPQVNHFKVGVLANHGVLQAKQRWQPMMDYLTEQVPNSHFEVVPVDFNGMRSQ LLGHDLQFIVTNPGQYLHLSNNFPLSWLATMKSRKHQGSTFTIGATIIVRADSPIRTLQDLRGRNVVASDPQALGGYQAA MGLLHKMGFLPEQFFGQVRFLGFPLEPLVYQVRDGSADAAIAPFCTLEEMIATGLVNQADYRVIHPTKPAGYDCEVSTQL YPNWSFAAADTVAPKLTMAITRALFDLPADHVAAITADTLGWTAPVSQLKVIELFKELQLQGASPPLYQTVYKWMAKNKE WGGVLLLIFIISTIYHLWLEYKFRQKSEFLLNTERQLKDKALQLERLQSAAILGEIGAGLAHELNQPIAAITQYSEGAML QLERLGQDNPELYDVLGKINAQSIRAGAVVHRIRGLLKRRQAKTEPLDIVLVVKEALALLRRELDRANVQVNVRVQGEPF ELMGDSVGLSQMWVNLVKNSLDALEACGDNRVRQLWIDIYFQPHEIKVLVIDNGEGLQGQASDLMASFASTKDAGLGLGL AICKDVVSRHHGSIQIENCQQSTQALLPWQQGCVVTVVLPKG
Specific function: Member of the two-component regulatory system dctS/dctR involved in the transport of C4-dicarboxylates. DctS functions as a membrane-associated protein kinase that phosphorylates dctR in response to environmental signals [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=251, Percent_Identity=25.8964143426295, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1790436, Length=266, Percent_Identity=23.6842105263158, Blast_Score=72, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 66753; Mature: 66622
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGSWCKAVVMGLCLSVIGLNQSYADDVPQVNHFKVGVLANHGVLQAKQRWQPMMDYLT CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH EQVPNSHFEVVPVDFNGMRSQLLGHDLQFIVTNPGQYLHLSNNFPLSWLATMKSRKHQGS HHCCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHCCCCC TFTIGATIIVRADSPIRTLQDLRGRNVVASDPQALGGYQAAMGLLHKMGFLPEQFFGQVR EEEEEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHCCEE FLGFPLEPLVYQVRDGSADAAIAPFCTLEEMIATGLVNQADYRVIHPTKPAGYDCEVSTQ EECCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCE LYPNWSFAAADTVAPKLTMAITRALFDLPADHVAAITADTLGWTAPVSQLKVIELFKELQ ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEHHHCCCCCCHHHHHHHHHHHHHH LQGASPPLYQTVYKWMAKNKEWGGVLLLIFIISTIYHLWLEYKFRQKSEFLLNTERQLKD CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHH KALQLERLQSAAILGEIGAGLAHELNQPIAAITQYSEGAMLQLERLGQDNPELYDVLGKI HHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHCC NAQSIRAGAVVHRIRGLLKRRQAKTEPLDIVLVVKEALALLRRELDRANVQVNVRVQGEP CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEEEECCCC FELMGDSVGLSQMWVNLVKNSLDALEACGDNRVRQLWIDIYFQPHEIKVLVIDNGEGLQG HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCC QASDLMASFASTKDAGLGLGLAICKDVVSRHHGSIQIENCQQSTQALLPWQQGCVVTVVL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEEE PKG CCC >Mature Secondary Structure ATGSWCKAVVMGLCLSVIGLNQSYADDVPQVNHFKVGVLANHGVLQAKQRWQPMMDYLT CCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH EQVPNSHFEVVPVDFNGMRSQLLGHDLQFIVTNPGQYLHLSNNFPLSWLATMKSRKHQGS HHCCCCCEEEEEECCCHHHHHHCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHCCCCC TFTIGATIIVRADSPIRTLQDLRGRNVVASDPQALGGYQAAMGLLHKMGFLPEQFFGQVR EEEEEEEEEEECCCCHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCHHHHCCEE FLGFPLEPLVYQVRDGSADAAIAPFCTLEEMIATGLVNQADYRVIHPTKPAGYDCEVSTQ EECCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCE LYPNWSFAAADTVAPKLTMAITRALFDLPADHVAAITADTLGWTAPVSQLKVIELFKELQ ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEHHHCCCCCCHHHHHHHHHHHHHH LQGASPPLYQTVYKWMAKNKEWGGVLLLIFIISTIYHLWLEYKFRQKSEFLLNTERQLKD CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHH KALQLERLQSAAILGEIGAGLAHELNQPIAAITQYSEGAMLQLERLGQDNPELYDVLGKI HHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHCC NAQSIRAGAVVHRIRGLLKRRQAKTEPLDIVLVVKEALALLRRELDRANVQVNVRVQGEP CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCEEEEEEECCCC FELMGDSVGLSQMWVNLVKNSLDALEACGDNRVRQLWIDIYFQPHEIKVLVIDNGEGLQG HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCC QASDLMASFASTKDAGLGLGLAICKDVVSRHHGSIQIENCQQSTQALLPWQQGCVVTVVL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEEE PKG CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8455557 [H]