Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 160873513

GI number: 160873513

Start: 441386

End: 442063

Strand: Direct

Name: radC [C]

Synonym: Sbal195_0388

Alternate gene names: 160873513

Gene position: 441386-442063 (Clockwise)

Preceding gene: 160873507

Following gene: 160873514

Centisome position: 8.25

GC content: 47.79

Gene sequence:

>678_bases
ATGGGCATTAAAGATTGGCCTGAGGGGGAAGGTCCCAGAGATAAACTGTTACAAAAAGGGGCGGGGCAGCTGTCGGATGC
GGAGTTATTGGCGGTATTACTGCGGAACGGTTTGGCGGGATTAAACGCGGTTGATCTTGCAAGGTCGCTTATTAGTGAGT
TTGGCGGCCTCAGAAACCTGCTTTGTGCTCCTCGAAATCAGGTATGTCGACTTCCGGGCGTAGGACCTGTAAAATACGCC
CAGCTTCAAGCTGCGGCCGAATTAGCGCGGCGTGTAGCGCAGGAAAATCTGCAAAGAGGTCAAGTTTTAACAAATCCCGA
TTTAACTCGGGACTATTTAATGAGACAATTGGCCGATCGCTCCTATGAAGTGTTCGCAGTTTTACTGCTGGATAGCCAGC
ATAGAGTGATTCAATTTGTCGAATTATTCCGCGGTACAATAGACTCAGCCTCAGTGTACCCACGTGAAGTGGTGAGCTTA
GTGCTGGAGAAAAAGGCCGCAGCAGTTATAGTTTGTCATAATCATCCGTCTGGTATTGCCGAGCCCAGTCAGGCTGACCG
ACGAATAACTGAGCGATTAAAAAATGCGTTAGCAACCATAGACGTATCCTTATTGGACCATATGGTTGTAGGTGATCGAG
AGATAGTTTCTTTTGCAGAACGAGGCTGGATTAATTAA

Upstream 100 bases:

>100_bases
AACAATATCACAAAGCGGTGAATTTTAGTGACTCTCCCAGTTCAAAAAATCTCGTCCATACTCAGTAAAGTGAAAATATG
TGAGATGACAGGGAGGTCGC

Downstream 100 bases:

>100_bases
TCTAACACTTGATCTTCACTCTGTGATCGTGTATAAAATGCGCCCTCTTTGTGCCTCGGGCGACGGCCATACGAGGCACA
TTAATGCTCGAGCGTTAAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MGIKDWPEGEGPRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPRNQVCRLPGVGPVKYA
QLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAVLLLDSQHRVIQFVELFRGTIDSASVYPREVVSL
VLEKKAAAVIVCHNHPSGIAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN

Sequences:

>Translated_225_residues
MGIKDWPEGEGPRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPRNQVCRLPGVGPVKYA
QLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAVLLLDSQHRVIQFVELFRGTIDSASVYPREVVSL
VLEKKAAAVIVCHNHPSGIAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN
>Mature_224_residues
GIKDWPEGEGPRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNLLCAPRNQVCRLPGVGPVKYAQ
LQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADRSYEVFAVLLLDSQHRVIQFVELFRGTIDSASVYPREVVSLV
LEKKAAAVIVCHNHPSGIAEPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=45.0704225352113, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1788997, Length=127, Percent_Identity=45.6692913385827, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI2367100, Length=125, Percent_Identity=45.6, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=44, Blast_Score=110, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24798; Mature: 24667

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKDWPEGEGPRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNL
CCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LCAPRNQVCRLPGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADR
HHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
SYEVFAVLLLDSQHRVIQFVELFRGTIDSASVYPREVVSLVLEKKAAAVIVCHNHPSGIA
CHHHHHEEHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GIKDWPEGEGPRDKLLQKGAGQLSDAELLAVLLRNGLAGLNAVDLARSLISEFGGLRNL
CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LCAPRNQVCRLPGVGPVKYAQLQAAAELARRVAQENLQRGQVLTNPDLTRDYLMRQLADR
HHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC
SYEVFAVLLLDSQHRVIQFVELFRGTIDSASVYPREVVSLVLEKKAAAVIVCHNHPSGIA
CHHHHHEEHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
EPSQADRRITERLKNALATIDVSLLDHMVVGDREIVSFAERGWIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA