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The map label for this gene is yeaT [C]

Identifier: 160873499

GI number: 160873499

Start: 427983

End: 428882

Strand: Reverse

Name: yeaT [C]

Synonym: Sbal195_0374

Alternate gene names: 160873499

Gene position: 428882-427983 (Counterclockwise)

Preceding gene: 160873501

Following gene: 160873498

Centisome position: 8.02

GC content: 50.0

Gene sequence:

>900_bases
ATGGAGCACTTTTCGGCACTACCTATCTTTGTCACTGTAGTGGAATGCGGTAGCTTTTCGCTGGCAAGTCAAAAGCTTGG
GCTGAGTAAATCGGCGGTGAGTAAACGCATTACCCTATTAGAACAAAGTCTGGGTATTCAACTCTTGCACCGTACCACTC
GCAGCTTAAGTCTTACCGAGGCAGGCGCCCGCTACTTCGACTATGTTCGCCCTGCAGTTAAACTCGCAGAGGAAGGATTG
GACGCTATTTCCGAGCTACAACAAGCGCCTCAGGGCAGTCTGCGCATCGCTGCCCCTATGGTATTTGGCCGCTTGCATAT
CGCCCCTTTGATCCCAGAATTTCTGCGCCGTTATCCGAAAATACAGCTGCAAATGCAGATGGATGATAAGACCACCGATT
TAATTGCTGGCGGATTCGATCTGGCGATTCGCATCGGCGAACTGCCAGATTCAAGTCTTATTGCCCGTAAAATTGCCCCT
TGTTTAAGTGTCATTTGCGCCTCACCCGAATATCTCGCTCGCCACGCTGCGCCACAAACGCCGCAGCAACTCAGCCAACA
TAACTGTTTGTTCTACTCATATTTTCGTGATGGTGTTGAATGGACCTTCTTAAGCCCGCAGGGCCCCACTCGTATCCAGC
CGAACGGTAACTATCAAGTCAACAATAGTGATGCCATCCACCAAGCCACACTCGATGGTCTAGGCATCGCCAACCTGCCC
CGCTTCATGGTCGACACCGACTTACAAGCTGGCCGCCTACAAGCCTTGCTCGCAGACCATCCCCTCCCCGAACATGGCAT
CTACGCGGTTTATCCACAGCGAAAACATTTGCCGACTAAGGTGAATGTATTGATTGAATTTTTGATTGAGTTCTTAGCAA
AGAGATTAAGCAATTATTAG

Upstream 100 bases:

>100_bases
CTACCTTGCATCAAGGGCAATGATAACCACGATAATAAAAACTGACTGTTGAGGTATCATCAACAATAATGGCTGGGGAT
AGCGATAATCTAAGGACACT

Downstream 100 bases:

>100_bases
ATAGGGTTAAGGATAAATACGGCTTTACATAATGGTTATAACGAACATAACCACACAGCCAAAACAGACTAATGAAAACA
CATTTAAACCAGATAAAACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MEHFSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGARYFDYVRPAVKLAEEGL
DAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPKIQLQMQMDDKTTDLIAGGFDLAIRIGELPDSSLIARKIAP
CLSVICASPEYLARHAAPQTPQQLSQHNCLFYSYFRDGVEWTFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANLP
RFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKRLSNY

Sequences:

>Translated_299_residues
MEHFSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGARYFDYVRPAVKLAEEGL
DAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPKIQLQMQMDDKTTDLIAGGFDLAIRIGELPDSSLIARKIAP
CLSVICASPEYLARHAAPQTPQQLSQHNCLFYSYFRDGVEWTFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANLP
RFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKRLSNY
>Mature_299_residues
MEHFSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTEAGARYFDYVRPAVKLAEEGL
DAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPKIQLQMQMDDKTTDLIAGGFDLAIRIGELPDSSLIARKIAP
CLSVICASPEYLARHAAPQTPQQLSQHNCLFYSYFRDGVEWTFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANLP
RFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKRLSNY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=36.1204013377926, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=39.5833333333333, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=32.8813559322034, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=33.2203389830508, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=32.6388888888889, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=34.1137123745819, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=29.6551724137931, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788706, Length=298, Percent_Identity=27.8523489932886, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=27.681660899654, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786448, Length=288, Percent_Identity=26.0416666666667, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=38.28125, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790011, Length=312, Percent_Identity=23.7179487179487, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=25.1968503937008, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788748, Length=117, Percent_Identity=37.6068376068376, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693105, Length=159, Percent_Identity=29.559748427673, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786713, Length=146, Percent_Identity=34.2465753424658, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790783, Length=278, Percent_Identity=24.8201438848921, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790262, Length=236, Percent_Identity=25.8474576271186, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33261; Mature: 33261

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHFSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTE
CCCCHHCHHHHEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGARYFDYVRPAVKLAEEGLDAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
IQLQMQMDDKTTDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPEYLARHAAPQT
EEEEEEECCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
PQQLSQHNCLFYSYFRDGVEWTFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANLP
HHHHHHCCCEEEEEHHCCCEEEEECCCCCCEECCCCCEEECCCCHHHHHHHCCCCCCCCC
RFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKRLSNY
HHHHCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEHFSALPIFVTVVECGSFSLASQKLGLSKSAVSKRITLLEQSLGIQLLHRTTRSLSLTE
CCCCHHCHHHHEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGARYFDYVRPAVKLAEEGLDAISELQQAPQGSLRIAAPMVFGRLHIAPLIPEFLRRYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
IQLQMQMDDKTTDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPEYLARHAAPQT
EEEEEEECCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCC
PQQLSQHNCLFYSYFRDGVEWTFLSPQGPTRIQPNGNYQVNNSDAIHQATLDGLGIANLP
HHHHHHCCCEEEEEHHCCCEEEEECCCCCCEECCCCCEEECCCCHHHHHHHCCCCCCCCC
RFMVDTDLQAGRLQALLADHPLPEHGIYAVYPQRKHLPTKVNVLIEFLIEFLAKRLSNY
HHHHCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]