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The map label for this gene is tdcF [C]

Identifier: 160873482

GI number: 160873482

Start: 405303

End: 405686

Strand: Reverse

Name: tdcF [C]

Synonym: Sbal195_0357

Alternate gene names: 160873482

Gene position: 405686-405303 (Counterclockwise)

Preceding gene: 160873483

Following gene: 160873481

Centisome position: 7.59

GC content: 46.88

Gene sequence:

>384_bases
ATGGCAGAAAAAATCATCATAGCGACCGAAAACGCCCCTGCGGCCATCGGCACTTATTCACAGGCCGTCAAAGTCGGCAG
CACAGTATATTTATCCGGCCAAATTCCGCTTGTGCCAAGCACAATGCAAATTGTCAGCGATGATTTTGAAGCTCAAGTGG
TGCAAGTATTTGAAAACCTAACGGCGGTTTGTACTGCTGCGGGCGGTTCAATCAACGATATCGTTAAGCTTAACATCTTC
CTGATTGATTTAAGCCACTTTGCAAAAGTGAATGAAATCATGAGCGGTTACTTCAGCCAGCCATACCCTGCACGTGCAGC
TATCGGCGTGAAGCAATTGCCGAAGGATTCTCAAGTTGAAATGGATGGCGTGATGGAGCTGTAA

Upstream 100 bases:

>100_bases
AGGATCCATTTAGCCAACGTGATGCGCCGAATTAGGGTACTGCCCGAAGTGCTGCGTACGTCCCGTAATCGTTAATTAAC
TCAACATTAGAGAGAGCGTC

Downstream 100 bases:

>100_bases
GCTCTGGCATTCCACTTCAACCAACAAAAAGGCGCTGCGGCGCCTTTTTTGTTGCCGCCCCCCTCCTCGTTTCCGCTTAC
TATTCTCTTCATCTTATTTT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAEKIIIATENAPAAIGTYSQAVKVGSTVYLSGQIPLVPSTMQIVSDDFEAQVVQVFENLTAVCTAAGGSINDIVKLNIF
LIDLSHFAKVNEIMSGYFSQPYPARAAIGVKQLPKDSQVEMDGVMEL

Sequences:

>Translated_127_residues
MAEKIIIATENAPAAIGTYSQAVKVGSTVYLSGQIPLVPSTMQIVSDDFEAQVVQVFENLTAVCTAAGGSINDIVKLNIF
LIDLSHFAKVNEIMSGYFSQPYPARAAIGVKQLPKDSQVEMDGVMEL
>Mature_126_residues
AEKIIIATENAPAAIGTYSQAVKVGSTVYLSGQIPLVPSTMQIVSDDFEAQVVQVFENLTAVCTAAGGSINDIVKLNIFL
IDLSHFAKVNEIMSGYFSQPYPARAAIGVKQLPKDSQVEMDGVMEL

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.9752066115703, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=41.9354838709677, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=42.9752066115703, Blast_Score=101, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=45.6692913385827, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=45.6692913385827, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=45.6692913385827, Blast_Score=105, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=116, Percent_Identity=37.0689655172414, Blast_Score=90, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=79, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=36.3636363636364, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13581; Mature: 13450

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKIIIATENAPAAIGTYSQAVKVGSTVYLSGQIPLVPSTMQIVSDDFEAQVVQVFENL
CCCEEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHH
TAVCTAAGGSINDIVKLNIFLIDLSHFAKVNEIMSGYFSQPYPARAAIGVKQLPKDSQVE
HHHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCCC
MDGVMEL
CCCEECC
>Mature Secondary Structure 
AEKIIIATENAPAAIGTYSQAVKVGSTVYLSGQIPLVPSTMQIVSDDFEAQVVQVFENL
CCEEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHH
TAVCTAAGGSINDIVKLNIFLIDLSHFAKVNEIMSGYFSQPYPARAAIGVKQLPKDSQVE
HHHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCCC
MDGVMEL
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]