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The map label for this gene is ydcO [H]

Identifier: 160873453

GI number: 160873453

Start: 370008

End: 371195

Strand: Direct

Name: ydcO [H]

Synonym: Sbal195_0328

Alternate gene names: 160873453

Gene position: 370008-371195 (Clockwise)

Preceding gene: 160873449

Following gene: 160873455

Centisome position: 6.92

GC content: 53.11

Gene sequence:

>1188_bases
ATGTGGCGAGATGCAGGGAGTTTGTCAAAAATATCAGCGGGTTTTATTGCGGTATTGGTGGGTTATAGCAGCTCGGCTGT
GATTATCTTTCAAGCGGCGGAGGCCGTGGGTGCGACACCTGCACAGATTAGTTCATGGCTGTGGGCTTTAGGTGTGGGCA
TGGGCGTGACCAGCATAGGATTATCGCTTTACTACAAGAATCCTATTCTAACGGCTTGGTCGACACCGGGCGCGGCGCTG
ATGGTGACCAGCCTCGCGGGATTGAGCGTCAACCAAGCCATAGGCGCGTTTCTGGTGAGTTCGATTTTAATTACCCTTTG
TGGGATGGCGGGCTGGATGGATAAACTTATTCGTATCATGCCGCAGTCAGTCGCTTCAGCCATGTTGGCGGGGATCCTGC
TGCAATTTGGCCTAGGGCTTTTTCAGGCGATGCAAACCCAGCTGAGCCTCATATTGATCATGCTGTTGGTGTTTGTCGTC
CTTAAGCCTTTTGCGCCGCGCTACATCATCTTGCTGACCTTGCTGGTGGGCATCGGCATGAGCTTTCAATTAGATTTACT
CAAGTTAGATGCCGTTCAGTTGCAACTGGCGATGCCGGTATGGACCATGCCTGAGTTTTCGCTGGCGAGTGTGATTGGCG
TGGCGTTACCGCTGTTTGTGGTCACTATGGCCTCGCAAAATATGCCGGGCGTTGCTGCGCTGCACGGTAATGGCTACAGG
CCGCCTATTTCGCCTTTGATCACGAGCACAGGGCTAATCGGGGTTATCCTCGCGCCCTTTGGCGGTTTTGCCTTTAATTT
ATCCGCCATTACAGCGGCGATTTGCATGGGTAAAGAAGCTGACCCAAATCCCGCGACCCGCTACTGGGCGGCGGTATGGG
GCGGGGTGTTTTACTTTATCACTGGGTTACTCGGCGCCACTGTGGTTGGTCTGTTTTCCGCTTTCCCGAAGGAATTAGTA
CTGGCCATCGCCGGATTAGCCCTGCTCGGCACTATCGCCAATAGCCTGACTGCCGCATTAGCTAAAACCGAAGATCGCGA
AGTAGCGGTGATCACTTTCTTGGTCACGGCATCGGGTTTTAGTGTGCTGGGCATCGGCAGCGCATTTTGGGGGCTGTTGC
TTGGGTTTATTATCCATTGGTGGAACGGGCACAGAACTGCATCAGTAGTTAAGCGAGCGAATACTTAA

Upstream 100 bases:

>100_bases
TTAGTTTGTACGTTATAACGCACAGGTGCTATCTTGTCCATCTCGTACGTTATAGCGCACAACGTGGTGGCGACATCAAT
TGCAGAGAAAGGGAGTGAGT

Downstream 100 bases:

>100_bases
CTGCAGCAAAGCGCCTTAGAGATGAATTTCAAAGACTAAGGCGCATGTTTTTTAGATTTTCTTTGTCATAAACACGCTAT
TGGGGTCGAGTTGGTAGCCG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIGLSLYYKNPILTAWSTPGAAL
MVTSLAGLSVNQAIGAFLVSSILITLCGMAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVV
LKPFAPRYIILLTLLVGIGMSFQLDLLKLDAVQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALAKTEDREVAVITFLVTASGFSVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT

Sequences:

>Translated_395_residues
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIGLSLYYKNPILTAWSTPGAAL
MVTSLAGLSVNQAIGAFLVSSILITLCGMAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVV
LKPFAPRYIILLTLLVGIGMSFQLDLLKLDAVQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALAKTEDREVAVITFLVTASGFSVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT
>Mature_395_residues
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIGLSLYYKNPILTAWSTPGAAL
MVTSLAGLSVNQAIGAFLVSSILITLCGMAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVV
LKPFAPRYIILLTLLVGIGMSFQLDLLKLDAVQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALAKTEDREVAVITFLVTASGFSVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=368, Percent_Identity=50.5434782608696, Blast_Score=352, Evalue=3e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41428; Mature: 41428

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIG
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCHHHHH
LSLYYKNPILTAWSTPGAALMVTSLAGLSVNQAIGAFLVSSILITLCGMAGWMDKLIRIM
HEEEECCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVVLKPFAPRYIILLTLLVGIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
SFQLDLLKLDAVQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
CCEEHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFI
CCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
TGLLGATVVGLFSAFPKELVLAIAGLALLGTIANSLTAALAKTEDREVAVITFLVTASGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHCCC
SVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT
CEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIG
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCHHHHH
LSLYYKNPILTAWSTPGAALMVTSLAGLSVNQAIGAFLVSSILITLCGMAGWMDKLIRIM
HEEEECCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVVLKPFAPRYIILLTLLVGIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
SFQLDLLKLDAVQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
CCEEHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFI
CCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
TGLLGATVVGLFSAFPKELVLAIAGLALLGTIANSLTAALAKTEDREVAVITFLVTASGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHCCC
SVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT
CEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]