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The map label for this gene is yedU [C]

Identifier: 160873396

GI number: 160873396

Start: 308922

End: 309614

Strand: Reverse

Name: yedU [C]

Synonym: Sbal195_0270

Alternate gene names: 160873396

Gene position: 309614-308922 (Counterclockwise)

Preceding gene: 160873397

Following gene: 160873395

Centisome position: 5.79

GC content: 47.33

Gene sequence:

>693_bases
ATGAAAATGAATATATTAATGGTACTAACTTCACACGATAAACTCGGCGACACAGGTTTAAAAACCGGCTTTTGGCTCGA
AGAATTCGCCTCACCTTTTTATGAGTTTAAAGATAAAGGTTTTGACATTACCTTAGCCTCGCCATTGGGCGGTCAACCAC
CGCTCGATCCAAAAAGTGATGAGCCAGACTTTCAAACCGAAGCCACTGCGCGCTTTAGCAAAGATCCTGAGGCACAAGCA
CTGCTAGCAAATACCACTCGCTTAAGTGAAATCAACACAGCTGATTATGATGCGGTTTTCTATCCAGGCGGCCACGGCCC
ACTGTGGGATCTTGCCGAAGATCAACATTCTATTGCCTTGATTGAACAGTTCTATCAAGCGAATAAACCCCTAGGACTCG
TCTGTCATGCGCCTGCGGCACTACTGCACCCTAAAGCCAGTGATGGTAAGCCATTGGTCAGTGGCAAGCGCGTTACCGGT
TTCAGTAATTCTGAAGAAGAAGCAGTGCAACTTACTCATATCGTGCCATTTTTAGTCGAAGACATGCTGCAGAAAAACGG
CGGCACTTATGTCAAAGGTGATGATTGGACAAGCTTTGTTGTCGCAGATGGCCATTTGATCACAGGTCAAAACCCTGGAT
CATCCGAAGCCGTTGCGCAGGCCATCGTCGCGCAACTGAACGCCAGAGGCTAA

Upstream 100 bases:

>100_bases
ACCCAGCAATGAGCCGTGACATTTTGACCTTAGCCCTATAACGTCAAATGAACTAAACCCAAAGCTCACACGTATTGATG
TGAGCAACTTAGGTAAAGGT

Downstream 100 bases:

>100_bases
GCGATAAATGACGCGACACGCTCAGCTTGAAGTGAATAATGACAAGCTCGAGTGTGCTAAATGCGGTAGAAATAGCTATC
GCACCATAATGGTGCGATAG

Product: ThiJ/PfpI domain-containing protein

Products: NA

Alternate protein names: ThiJ/PfpI Family Protein; ThiJ/PfpI Domain Protein; ThiJ/PfpI; DJ-1/PfpI Family Protein; Intracellular Protease/Amidase; DJ-1/PfpI Family; NonF-Related Protein; DJ-1/PfpI-Family Transcriptional Regulator; Peptidase; DJ-1/PfPI Family Protein; Intracellular Protease/Amidase ThiJ/PfpL Family; Exported Pfp1 Family Protein; C56 Family Peptidase; Transcriptional Regulator; Amidotransferase; Protease I; Intracellular Protease Amidase; ThiJ/PfpI Protein; Regulatory Protein; ThiJ Protein; NonF Protein; Chaperone Protein; Thij/Pfpi Domain-Containing Protein; Transcriptional Regulator Fis Family; Protease; Intracellular Protease/Amidase ThiJ/PfpL Family Protein; Pfp1 Family Protein; Fis Family Transcriptional Regulator; DJ-1/PfpI Family Transcriptional Regulator

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKMNILMVLTSHDKLGDTGLKTGFWLEEFASPFYEFKDKGFDITLASPLGGQPPLDPKSDEPDFQTEATARFSKDPEAQA
LLANTTRLSEINTADYDAVFYPGGHGPLWDLAEDQHSIALIEQFYQANKPLGLVCHAPAALLHPKASDGKPLVSGKRVTG
FSNSEEEAVQLTHIVPFLVEDMLQKNGGTYVKGDDWTSFVVADGHLITGQNPGSSEAVAQAIVAQLNARG

Sequences:

>Translated_230_residues
MKMNILMVLTSHDKLGDTGLKTGFWLEEFASPFYEFKDKGFDITLASPLGGQPPLDPKSDEPDFQTEATARFSKDPEAQA
LLANTTRLSEINTADYDAVFYPGGHGPLWDLAEDQHSIALIEQFYQANKPLGLVCHAPAALLHPKASDGKPLVSGKRVTG
FSNSEEEAVQLTHIVPFLVEDMLQKNGGTYVKGDDWTSFVVADGHLITGQNPGSSEAVAQAIVAQLNARG
>Mature_230_residues
MKMNILMVLTSHDKLGDTGLKTGFWLEEFASPFYEFKDKGFDITLASPLGGQPPLDPKSDEPDFQTEATARFSKDPEAQA
LLANTTRLSEINTADYDAVFYPGGHGPLWDLAEDQHSIALIEQFYQANKPLGLVCHAPAALLHPKASDGKPLVSGKRVTG
FSNSEEEAVQLTHIVPFLVEDMLQKNGGTYVKGDDWTSFVVADGHLITGQNPGSSEAVAQAIVAQLNARG

Specific function: Not Known. [C]

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI310129235, Length=196, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI239749942, Length=196, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI32699045, Length=196, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI310129239, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI310129233, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320742, Length=228, Percent_Identity=32.8947368421053, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6324967, Length=227, Percent_Identity=30.3964757709251, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6324975, Length=227, Percent_Identity=30.3964757709251, Blast_Score=82, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6323984, Length=227, Percent_Identity=29.9559471365639, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24901; Mature: 24901

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMNILMVLTSHDKLGDTGLKTGFWLEEFASPFYEFKDKGFDITLASPLGGQPPLDPKSD
CCCEEEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHCCCEEEEEECCCCCCCCCCCCCC
EPDFQTEATARFSKDPEAQALLANTTRLSEINTADYDAVFYPGGHGPLWDLAEDQHSIAL
CCCCCCHHHHHCCCCCCHHEEECCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHH
IEQFYQANKPLGLVCHAPAALLHPKASDGKPLVSGKRVTGFSNSEEEAVQLTHIVPFLVE
HHHHHHCCCCEEEEEECCHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
DMLQKNGGTYVKGDDWTSFVVADGHLITGQNPGSSEAVAQAIVAQLNARG
HHHHHCCCCEEECCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKMNILMVLTSHDKLGDTGLKTGFWLEEFASPFYEFKDKGFDITLASPLGGQPPLDPKSD
CCCEEEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHCCCEEEEEECCCCCCCCCCCCCC
EPDFQTEATARFSKDPEAQALLANTTRLSEINTADYDAVFYPGGHGPLWDLAEDQHSIAL
CCCCCCHHHHHCCCCCCHHEEECCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHH
IEQFYQANKPLGLVCHAPAALLHPKASDGKPLVSGKRVTGFSNSEEEAVQLTHIVPFLVE
HHHHHHCCCCEEEEEECCHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHH
DMLQKNGGTYVKGDDWTSFVVADGHLITGQNPGSSEAVAQAIVAQLNARG
HHHHHCCCCEEECCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA