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The map label for this gene is ccpB

Identifier: 16081139

GI number: 16081139

Start: 4196786

End: 4197721

Strand: Reverse

Name: ccpB

Synonym: BSU40870

Alternate gene names: 16081139

Gene position: 4197721-4196786 (Counterclockwise)

Preceding gene: 16081140

Following gene: 16081138

Centisome position: 99.58

GC content: 43.38

Gene sequence:

>936_bases
ATGGCAAATATAAAAGAGATCGCAAGACTGGCAAATGTATCTGTTTCGACTGTCTCGCGTGTATTGAATCATCATCCGTA
TGTATCTGAAGAAAAGAGAAAGCTTGTTCATCAAGTCATGAAGGAATTGGATTATACACCAAATCGAACCGCAATCGATC
TCATTCGCGGGAAAACCCATACGGTCGGTGTGATTCTGCCTTATAGCGATCATCCCTGCTTTGATAAAATCGTTAACGGA
ATCACCAAGGCGGCTTTTCAGCATGAGTATGCAACGACCCTTCTCCCCACCAATTATAACCCCGATATTGAAATCAAATA
TTTAGAGCTGTTAAGAACGAAGAAAATAGACGGTCTCATCATTACTTCCCGCGCCAATCATTGGGACAGCATTTTAGCTT
ATCAGGAATATGGGCCGGTCATCGCTTGTGAGGATACCGGAGACATTGATGTCCCTTGTGCTTTTAATGACAGAAAAACT
GCTTATGCAGAGAGCTTTCGCTATTTAAAGAGCCGCGGGCATGAGAATATTGCTTTTACGTGTGTCAGAGAAGCTGATAG
GAGCCCGAGCACGGCTGATAAAGCTGCGGCCTATAAAGCTGTCTGCGGAAGGTTGGAAGACCGCCATATGCTGTCCGGAT
GCAACGATATGAATGATGGTGAGCTGGCAGCTGAACATTTTTATATGAGCGGGCGGGTTCCGACTGCTATTTATGCAAAT
AGTGATGAAGTGGCAGCTGGAATTCATCTATTTGCCAAAAAGAATAATTGGGATGTTGAAATCATAGGCGAGGGAAATAC
TTCTATCAGCCGTGTTCTTGGTTTTCCGTCGCTTGATTTGAATCTTGAGCAGCTCGGCATCGCAGCATTTTCTCTATTTT
TGCAGGATGAACCCGCTGATATCAAAATTCAGCATAAATTTAAGAAAAAAGCTTGA

Upstream 100 bases:

>100_bases
GGTTCCGACCATTGTCCTGTTGAACTTATCATCAATATATGATGAGATAGCAGTAAGGATTTTACACTTACTGCTTTTTT
TATATGAAAAGGAGAAAGAG

Downstream 100 bases:

>100_bases
ACTGAAATGCATTTCATACCTTATAACTTCATTGAAGGCGAAGGAGGAGGAAGAAATGCAGATTGAACATACAGCGGTCT
GGGTCAATGATTTAGAGCGA

Product: transcriptional repressor of carbon supply (LacI family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MANIKEIARLANVSVSTVSRVLNHHPYVSEEKRKLVHQVMKELDYTPNRTAIDLIRGKTHTVGVILPYSDHPCFDKIVNG
ITKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKKIDGLIITSRANHWDSILAYQEYGPVIACEDTGDIDVPCAFNDRKT
AYAESFRYLKSRGHENIAFTCVREADRSPSTADKAAAYKAVCGRLEDRHMLSGCNDMNDGELAAEHFYMSGRVPTAIYAN
SDEVAAGIHLFAKKNNWDVEIIGEGNTSISRVLGFPSLDLNLEQLGIAAFSLFLQDEPADIKIQHKFKKKA

Sequences:

>Translated_311_residues
MANIKEIARLANVSVSTVSRVLNHHPYVSEEKRKLVHQVMKELDYTPNRTAIDLIRGKTHTVGVILPYSDHPCFDKIVNG
ITKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKKIDGLIITSRANHWDSILAYQEYGPVIACEDTGDIDVPCAFNDRKT
AYAESFRYLKSRGHENIAFTCVREADRSPSTADKAAAYKAVCGRLEDRHMLSGCNDMNDGELAAEHFYMSGRVPTAIYAN
SDEVAAGIHLFAKKNNWDVEIIGEGNTSISRVLGFPSLDLNLEQLGIAAFSLFLQDEPADIKIQHKFKKKA
>Mature_310_residues
ANIKEIARLANVSVSTVSRVLNHHPYVSEEKRKLVHQVMKELDYTPNRTAIDLIRGKTHTVGVILPYSDHPCFDKIVNGI
TKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKKIDGLIITSRANHWDSILAYQEYGPVIACEDTGDIDVPCAFNDRKTA
YAESFRYLKSRGHENIAFTCVREADRSPSTADKAAAYKAVCGRLEDRHMLSGCNDMNDGELAAEHFYMSGRVPTAIYANS
DEVAAGIHLFAKKNNWDVEIIGEGNTSISRVLGFPSLDLNLEQLGIAAFSLFLQDEPADIKIQHKFKKKA

Specific function: Transcriptional regulator involved in catabolite repression of several operons

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790194, Length=291, Percent_Identity=27.8350515463918, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790369, Length=285, Percent_Identity=27.0175438596491, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787948, Length=334, Percent_Identity=26.3473053892216, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789202, Length=284, Percent_Identity=30.9859154929577, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788474, Length=288, Percent_Identity=27.4305555555556, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790689, Length=275, Percent_Identity=25.8181818181818, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994940, Length=188, Percent_Identity=28.7234042553192, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790715, Length=293, Percent_Identity=23.5494880546075, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787580, Length=322, Percent_Identity=25.4658385093168, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786268, Length=124, Percent_Identity=30.6451612903226, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCPB_BACSU (P37517)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- EMBL:   L16865
- PIR:   S66011
- RefSeq:   NP_391967.1
- ProteinModelPortal:   P37517
- SMR:   P37517
- EnsemblBacteria:   EBBACT00000003560
- GeneID:   937876
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40870
- NMPDR:   fig|224308.1.peg.4093
- GenoList:   BSU40870
- GeneTree:   EBGT00070000031749
- HOGENOM:   HBG753640
- OMA:   QVFGPVG
- PhylomeDB:   P37517
- ProtClustDB:   CLSK888212
- BioCyc:   BSUB:BSU40870-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761
- PRINTS:   PR00036
- SMART:   SM00354

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 34847; Mature: 34716

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS00356 HTH_LACI_1; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIKEIARLANVSVSTVSRVLNHHPYVSEEKRKLVHQVMKELDYTPNRTAIDLIRGKTH
CCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCE
TVGVILPYSDHPCFDKIVNGITKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKKIDGLI
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHCCCCCEE
ITSRANHWDSILAYQEYGPVIACEDTGDIDVPCAFNDRKTAYAESFRYLKSRGHENIAFT
EEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
CVREADRSPSTADKAAAYKAVCGRLEDRHMLSGCNDMNDGELAAEHFYMSGRVPTAIYAN
EEECCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHEEECCCCCEEEEEC
SDEVAAGIHLFAKKNNWDVEIIGEGNTSISRVLGFPSLDLNLEQLGIAAFSLFLQDEPAD
CCCCEEEEEEEEECCCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCC
IKIQHKFKKKA
EEEEECCCCCC
>Mature Secondary Structure 
ANIKEIARLANVSVSTVSRVLNHHPYVSEEKRKLVHQVMKELDYTPNRTAIDLIRGKTH
CCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCE
TVGVILPYSDHPCFDKIVNGITKAAFQHEYATTLLPTNYNPDIEIKYLELLRTKKIDGLI
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHCCCCCEE
ITSRANHWDSILAYQEYGPVIACEDTGDIDVPCAFNDRKTAYAESFRYLKSRGHENIAFT
EEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
CVREADRSPSTADKAAAYKAVCGRLEDRHMLSGCNDMNDGELAAEHFYMSGRVPTAIYAN
EEECCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHEEECCCCCEEEEEC
SDEVAAGIHLFAKKNNWDVEIIGEGNTSISRVLGFPSLDLNLEQLGIAAFSLFLQDEPAD
CCCCEEEEEEEEECCCCCEEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHEEECCCCCC
IKIQHKFKKKA
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8011666; 9457849