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The map label for this gene is yybA

Identifier: 16081123

GI number: 16081123

Start: 4183445

End: 4183897

Strand: Reverse

Name: yybA

Synonym: BSU40710

Alternate gene names: 16081123

Gene position: 4183897-4183445 (Counterclockwise)

Preceding gene: 16081126

Following gene: 16081122

Centisome position: 99.25

GC content: 39.96

Gene sequence:

>453_bases
ATGAATGATATTTTGCGTGAGATCGGCATGATAGCAAGAGCGTTGGATTCCATAAGCAACATCGAATTTAAAGATTTAGA
CTTAACAAGAGGGCAGTATCTCTATCTCGTGCGTATATACGAAAATCCGGGAATTATTCAAGAAAAATTGGCGGAAATGA
TAAAAGTGGACCGGACAACGGCCGCGCGGGCCATTAAGAAGCTGGAAATGCAGGGATTTATTCAAAAACTGCCGGATGAG
CAAAATAAAAAAATAAAAAAACTGTTCCCGACTGAGAAAGGGAAAAAGGTATATCCATTGTTAAGAAGAGAAGGAGAACA
TTCCACGGAAGTGGCCTTGTCCGGTTTTACTTCAGAGGAAAAGGAAACCATTTCTGCACTCCTTCATAGAGTGAGGAAGA
ATATAGAACGTGATTGGGAATATGTGAAGAAGGGGAACAAAAGGGATTATTAA

Upstream 100 bases:

>100_bases
GATATTAGTCTGGACTGTACAGCACGCATGTGGTCTTATAATAGTAAGGTTAAAACATTTTTGTTGTAATTGCAACAAAA
ATACGTGAGGGGTTTTAGGA

Downstream 100 bases:

>100_bases
TGGACAACGTTAACAAGTTGAGCTGATGCTGGCGAAAATCGGCGTTTCCTCTCAAGAATCCAGTCAGCTCGAGCGTGGGT
GAAAATAGTCCGTTCACTTC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNDILREIGMIARALDSISNIEFKDLDLTRGQYLYLVRIYENPGIIQEKLAEMIKVDRTTAARAIKKLEMQGFIQKLPDE
QNKKIKKLFPTEKGKKVYPLLRREGEHSTEVALSGFTSEEKETISALLHRVRKNIERDWEYVKKGNKRDY

Sequences:

>Translated_150_residues
MNDILREIGMIARALDSISNIEFKDLDLTRGQYLYLVRIYENPGIIQEKLAEMIKVDRTTAARAIKKLEMQGFIQKLPDE
QNKKIKKLFPTEKGKKVYPLLRREGEHSTEVALSGFTSEEKETISALLHRVRKNIERDWEYVKKGNKRDY
>Mature_150_residues
MNDILREIGMIARALDSISNIEFKDLDLTRGQYLYLVRIYENPGIIQEKLAEMIKVDRTTAARAIKKLEMQGFIQKLPDE
QNKKIKKLFPTEKGKKVYPLLRREGEHSTEVALSGFTSEEKETISALLHRVRKNIERDWEYVKKGNKRDY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYBA_BACSU (P37503)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- PIR:   S65996
- RefSeq:   NP_391951.1
- ProteinModelPortal:   P37503
- SMR:   P37503
- EnsemblBacteria:   EBBACT00000000602
- GeneID:   937872
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40710
- NMPDR:   fig|224308.1.peg.4077
- GenoList:   BSU40710
- GeneTree:   EBGT00050000001093
- HOGENOM:   HBG549127
- OMA:   RGQYLYL
- ProtClustDB:   CLSK2752581
- BioCyc:   BSUB:BSU40710-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 17585; Mature: 17585

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDILREIGMIARALDSISNIEFKDLDLTRGQYLYLVRIYENPGIIQEKLAEMIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
AARAIKKLEMQGFIQKLPDEQNKKIKKLFPTEKGKKVYPLLRREGEHSTEVALSGFTSEE
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHCCCCCHH
KETISALLHRVRKNIERDWEYVKKGNKRDY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNDILREIGMIARALDSISNIEFKDLDLTRGQYLYLVRIYENPGIIQEKLAEMIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH
AARAIKKLEMQGFIQKLPDEQNKKIKKLFPTEKGKKVYPLLRREGEHSTEVALSGFTSEE
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHCCCCCHH
KETISALLHRVRKNIERDWEYVKKGNKRDY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377