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The map label for this gene is yxjL

Identifier: 16080942

GI number: 16080942

Start: 3994369

End: 3995025

Strand: Direct

Name: yxjL

Synonym: BSU38910

Alternate gene names: 16080942

Gene position: 3994369-3995025 (Clockwise)

Preceding gene: 16080941

Following gene: 16080943

Centisome position: 94.75

GC content: 49.77

Gene sequence:

>657_bases
ATGAACAAAGATAAAATACGCGTAGCGCTTGCCGATGATCAGCCGCTTGTGCGTGAAGGCTTCCGCTACGTCATCAACGC
ACAGACGGATATGACGGTTTCTGGCGAGGCCGGCGACGGTCACGATATTATAGCACTCGCAAAACAAACAAAACCCGATG
TCATCCTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACA
AAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTGCGGGCGCAGTCGGCTATCTGCT
GAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAG
CTGCTAAAATCATCAGTGAGACATTTCGGGCGAAACAGCAAACTCATGCCGAAGAACTGGCAGAGCCGTTCACCAAAAGA
GAGCTTGAGGTTCTTCAGCAAATGGCCTACGGACTGAGAAATGAGGATATTGCTGAAAAGCTTTTCGTCAGTGAAAGCAC
TGTGAAAACCCACGTGCACCGCATCCTGCAAAAATGCAATGCCCAAGACCGGACACAGGCAGTCGTTTTTGCCATTCGAA
ACGGTATTGTGCAATAG

Upstream 100 bases:

>100_bases
GAAAAAGCAGGCGGTTCCCTTACTTTCAGTGCCGTACAGCCGAGCGGCCTGAAAATTGAGCTGTCATTGCCGCTCATGAC
AACGAATAAGGAGCAAAAAG

Downstream 100 bases:

>100_bases
AAATCTCTCATCCCGCCATGCTAAAATAAGACAAAGGAGATGATTGGAAATGAAAGAAGAAATCATTGAACGGTTTACTA
CATATGTAAAAGTCGATACA

Product: two-component response regulator YxjM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNKDKIRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCSGIEAAKDIMSALPNT
KIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKR
ELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIVQ

Sequences:

>Translated_218_residues
MNKDKIRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCSGIEAAKDIMSALPNT
KIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKR
ELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIVQ
>Mature_218_residues
MNKDKIRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQMPRCSGIEAAKDIMSALPNT
KIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKR
ELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIVQ

Specific function: Probable member of the two-component regulatory system yxjM/yxjL

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=39.6135265700483, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1787473, Length=209, Percent_Identity=35.4066985645933, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788222, Length=214, Percent_Identity=31.3084112149533, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790102, Length=190, Percent_Identity=33.6842105263158, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1788712, Length=207, Percent_Identity=26.5700483091787, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787277, Length=166, Percent_Identity=30.7228915662651, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082052, Length=103, Percent_Identity=36.8932038834951, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786747, Length=204, Percent_Identity=23.0392156862745, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXJL_BACSU (P55184)

Other databases:

- EMBL:   X99339
- EMBL:   D83026
- EMBL:   AL009126
- PIR:   A70080
- RefSeq:   NP_391770.1
- ProteinModelPortal:   P55184
- SMR:   P55184
- EnsemblBacteria:   EBBACT00000000966
- GeneID:   937427
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38910
- NMPDR:   fig|224308.1.peg.3896
- GenoList:   BSU38910
- GeneTree:   EBGT00070000031976
- HOGENOM:   HBG753323
- PhylomeDB:   P55184
- ProtClustDB:   CLSK2460969
- BioCyc:   BSUB:BSU38910-MONOMER
- GO:   GO:0005737
- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.25.40.10
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421
- SMART:   SM00448

Pfam domain/function: PF00196 GerE; PF00072 Response_reg; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 24245; Mature: 24245

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKDKIRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQ
CCCCEEEEEECCCCHHHHHCCCEEEECCCCEEEECCCCCCCCEEEEECCCCCCEEEEECC
MPRCSGIEAAKDIMSALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIR
CCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIVQ
HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNKDKIRVALADDQPLVREGFRYVINAQTDMTVSGEAGDGHDIIALAKQTKPDVILMDVQ
CCCCEEEEEECCCCHHHHHCCCEEEECCCCEEEECCCCCCCCEEEEECCCCCCEEEEECC
MPRCSGIEAAKDIMSALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDTLPEELIDAIR
CCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQMAYGLRNEDIAEK
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIVQ
HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377