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The map label for this gene is yxjO

Identifier: 16080939

GI number: 16080939

Start: 3991718

End: 3992593

Strand: Direct

Name: yxjO

Synonym: BSU38880

Alternate gene names: 16080939

Gene position: 3991718-3992593 (Clockwise)

Preceding gene: 16080936

Following gene: 16080940

Centisome position: 94.69

GC content: 47.72

Gene sequence:

>876_bases
ATGGATTTAAAATGGCTGCAAACCTTTATTGCCGCAGCGGAATCAGAGAGCTTCAGGGAGGCGGCTGAGCATCTGTATCT
CACACAGCCTGCCGTTTCTCAGCATATGAGGAAATTGGAAGATGAACTGGACATGAGGTTGTTTTTGCATAGCGGAAGAC
GAGTCGTACTGACTGACGAAGGCAGGCTCTTTTTGCCTTATGCCAAAGAAATGATCCATGTTTACCAAGCTGGAAAGCAG
AAAGTCAGTCAATGGAAACAGGGGTACAGCCGATCACTCACGCTGGCCGTACACCCCTACATTGCGTCCTATATCTTGCC
TCGCTTTCTGCCAGCCTATATCCAAAAACATCCGCATGTCGAGCTTTCAACTCATGTGGCTGGATCTGACGCTATTAAAC
AAGCGGTGGAACACAATGAAGCTGATATTGGTTTGTCGCGGAAAGACCCGAACACCAACACTCTTTATTATCAGCATATA
TGCGAAGGTACGCTTTGTCTGGCGGCTCCTTTCCAAGAAAGCAGACCGGATGCTGCATCCGTCTTAACCCGCTATCGGCT
GCTAACGCATGATCATCCGTCATATGGGGATGCCTTTTTAGATAACATCCGATCACATTACCCGTATCTTCAAATGATGG
CTGTCGGGCAGACGGATACGGCTGTCCACATGATGAAAGCGGGAATGGGGGCATCTTTCCTCCCTACCTACATTATCAAA
CAGGAAGAAGCCGAAAAAAAGCTGATGGCTGTCAGCACGCCTGCACATCTAGAATTGCCTGCGTCCCAAACGTTTATGAT
GTGGAAAAGAAACAGCGAAGACATTCAGCATTTTCACGCCATGTTACATGACTTTATGCAGCGCGAACAAGTATAG

Upstream 100 bases:

>100_bases
ATAGGTATACTAAACGAATCGATGTATAATCAGTGATAAACAAATACGCATGTAAACGTAACAATTTGTTATGGATAACT
TGCAGTGAAGGAGATATTTC

Downstream 100 bases:

>100_bases
AGCTGAAAAATCAATCTGCCGGTTGACGTTTTTCTTTCCTATTTTCGCTATGCTTAATGCAGAAAGGATTTGATGACATG
GCGATGAGCCCTTATATTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MDLKWLQTFIAAAESESFREAAEHLYLTQPAVSQHMRKLEDELDMRLFLHSGRRVVLTDEGRLFLPYAKEMIHVYQAGKQ
KVSQWKQGYSRSLTLAVHPYIASYILPRFLPAYIQKHPHVELSTHVAGSDAIKQAVEHNEADIGLSRKDPNTNTLYYQHI
CEGTLCLAAPFQESRPDAASVLTRYRLLTHDHPSYGDAFLDNIRSHYPYLQMMAVGQTDTAVHMMKAGMGASFLPTYIIK
QEEAEKKLMAVSTPAHLELPASQTFMMWKRNSEDIQHFHAMLHDFMQREQV

Sequences:

>Translated_291_residues
MDLKWLQTFIAAAESESFREAAEHLYLTQPAVSQHMRKLEDELDMRLFLHSGRRVVLTDEGRLFLPYAKEMIHVYQAGKQ
KVSQWKQGYSRSLTLAVHPYIASYILPRFLPAYIQKHPHVELSTHVAGSDAIKQAVEHNEADIGLSRKDPNTNTLYYQHI
CEGTLCLAAPFQESRPDAASVLTRYRLLTHDHPSYGDAFLDNIRSHYPYLQMMAVGQTDTAVHMMKAGMGASFLPTYIIK
QEEAEKKLMAVSTPAHLELPASQTFMMWKRNSEDIQHFHAMLHDFMQREQV
>Mature_291_residues
MDLKWLQTFIAAAESESFREAAEHLYLTQPAVSQHMRKLEDELDMRLFLHSGRRVVLTDEGRLFLPYAKEMIHVYQAGKQ
KVSQWKQGYSRSLTLAVHPYIASYILPRFLPAYIQKHPHVELSTHVAGSDAIKQAVEHNEADIGLSRKDPNTNTLYYQHI
CEGTLCLAAPFQESRPDAASVLTRYRLLTHDHPSYGDAFLDNIRSHYPYLQMMAVGQTDTAVHMMKAGMGASFLPTYIIK
QEEAEKKLMAVSTPAHLELPASQTFMMWKRNSEDIQHFHAMLHDFMQREQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI145693105, Length=240, Percent_Identity=24.1666666666667, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082132, Length=251, Percent_Identity=25.4980079681275, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=32.6086956521739, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=22.8187919463087, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790399, Length=142, Percent_Identity=29.5774647887324, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788481, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787879, Length=285, Percent_Identity=23.1578947368421, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=21.3559322033898, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788296, Length=137, Percent_Identity=29.1970802919708, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI48994962, Length=175, Percent_Identity=26.2857142857143, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786508, Length=145, Percent_Identity=26.8965517241379, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787530, Length=283, Percent_Identity=24.3816254416961, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786448, Length=121, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YXJO_BACSU (P55181)

Other databases:

- EMBL:   X99339
- EMBL:   D83026
- EMBL:   AL009126
- PIR:   D70080
- RefSeq:   NP_391767.1
- ProteinModelPortal:   P55181
- EnsemblBacteria:   EBBACT00000001543
- GeneID:   937423
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38880
- NMPDR:   fig|224308.1.peg.3893
- GenoList:   BSU38880
- GeneTree:   EBGT00050000000807
- HOGENOM:   HBG338672
- OMA:   HVELSTH
- PhylomeDB:   P55181
- BioCyc:   BSUB:BSU38880-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 33431; Mature: 33431

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKWLQTFIAAAESESFREAAEHLYLTQPAVSQHMRKLEDELDMRLFLHSGRRVVLTDE
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GRLFLPYAKEMIHVYQAGKQKVSQWKQGYSRSLTLAVHPYIASYILPRFLPAYIQKHPHV
CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCC
ELSTHVAGSDAIKQAVEHNEADIGLSRKDPNTNTLYYQHICEGTLCLAAPFQESRPDAAS
EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCCCEEEECCCCCCCCCHHH
VLTRYRLLTHDHPSYGDAFLDNIRSHYPYLQMMAVGQTDTAVHMMKAGMGASFLPTYIIK
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH
QEEAEKKLMAVSTPAHLELPASQTFMMWKRNSEDIQHFHAMLHDFMQREQV
HHHHHHHHEEECCCCCEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLKWLQTFIAAAESESFREAAEHLYLTQPAVSQHMRKLEDELDMRLFLHSGRRVVLTDE
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
GRLFLPYAKEMIHVYQAGKQKVSQWKQGYSRSLTLAVHPYIASYILPRFLPAYIQKHPHV
CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCC
ELSTHVAGSDAIKQAVEHNEADIGLSRKDPNTNTLYYQHICEGTLCLAAPFQESRPDAAS
EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCCCEEEECCCCCCCCCHHH
VLTRYRLLTHDHPSYGDAFLDNIRSHYPYLQMMAVGQTDTAVHMMKAGMGASFLPTYIIK
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH
QEEAEKKLMAVSTPAHLELPASQTFMMWKRNSEDIQHFHAMLHDFMQREQV
HHHHHHHHEEECCCCCEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377