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The map label for this gene is cydB

Identifier: 16080926

GI number: 16080926

Start: 3976791

End: 3977807

Strand: Reverse

Name: cydB

Synonym: BSU38750

Alternate gene names: 16080926

Gene position: 3977807-3976791 (Counterclockwise)

Preceding gene: 16080927

Following gene: 16080925

Centisome position: 94.36

GC content: 47.69

Gene sequence:

>1017_bases
ATGGCATCTCTTCATGATCTTTGGTTTATACTCGTTGCTGTATTGTTTGTAGGATTCTTCTTTTTGGAAGGCTTTGATTT
CGGGGTCGGCATGGCGACCCGTTTTCTTGGCCATAATGAATTAGAACGCAGAGTGCTGATCAACACGATCGGGCCGTTCT
GGGACGCGAATGAAGTGTGGCTTTTGACTGGCGCAGGCGCCATTTTCGCGGCATTCCCAAACTGGTATGCAACGATGCTG
AGCGGTTATTACATTCCGTTTGTCATAGTGCTGCTTGCGTTAATGGGCCGCGGGGTCGCGTTTGAGTTCCGCGGCAAGGT
GGATCATTTAAAATGGGTAAAGGTTTGGGACTGGGTCGTTTTTTTCGGCAGTCTAATTCCTCCGTTTGTGCTTGGTGTGC
TGTTCACGACATTATTCCGCGGGATGCCGATTGATGCCGACATGAACATTCACGCACATGTATCTGATTATATCAATGTA
TATTCTATACTTGGCGGTGTGACGGTAACGCTTCTTTGCTTCCAGCATGGATTAATGTTTATCACGCTGCGTACGATTGG
TGATTTGCAAAACCGCGCCCGGAAAATGGCGCAAAAGATAATGGGTGTTGTTTTTGTAGCGGTTCTTGCCTTCGCGGCCC
TTTCTGCGTATCAGACAGACATGTTTACACGCCGCGGCGAGATTACCATTCCGCTCGCTGTTTTGATTGTCATCTGCTTT
ATGCTCGCGGCTGTATTTATTCGTAAGAAAAAAGACGGCTGGACATTTGGGATGACAGGCGCTGGTCTGGCGCTGACCGT
GGGAATGATCTTTATTTCCCTATTCCCTCGTGTAATGGTCAGCTCGCTTCATAGCGCATACGATTTAACAGTAGCTAACG
CTTCTTCTGGAGATTATTCGCTTAAAGTCATGTCAATTGCAGCATTAACGCTATTGCCGTTCGTCATCGGCAGCCAGATC
TGGAGCTATTATGTCTTCCGGAAGCGCGTCAGCCATAAGGAGCCTATGACTTATTAA

Upstream 100 bases:

>100_bases
CTTGTCTTCTTGTTTATCCGTGAGATTAAAAAAGGTGCGGAGCATGATAATCATCATGATGTGCCTGTATCAACAGATCC
ATTTAGTCAGGAGGTATACC

Downstream 100 bases:

>100_bases
TGGGAAAAGACCTGTTTCGATATAAAGGAATGAAGCGGATTCTCACCTTGATTACTTGTTTAACGTTGATTCAGACAGCC
GCCATTATTATGCAGGCAGA

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLLTGAGAIFAAFPNWYATML
SGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVSDYINV
YSILGGVTVTLLCFQHGLMFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGEITIPLAVLIVICF
MLAAVFIRKKKDGWTFGMTGAGLALTVGMIFISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQI
WSYYVFRKRVSHKEPMTY

Sequences:

>Translated_338_residues
MASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLLTGAGAIFAAFPNWYATML
SGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVSDYINV
YSILGGVTVTLLCFQHGLMFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGEITIPLAVLIVICF
MLAAVFIRKKKDGWTFGMTGAGLALTVGMIFISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQI
WSYYVFRKRVSHKEPMTY
>Mature_337_residues
ASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLLTGAGAIFAAFPNWYATMLS
GYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVSDYINVY
SILGGVTVTLLCFQHGLMFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGEITIPLAVLIVICFM
LAAVFIRKKKDGWTFGMTGAGLALTVGMIFISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIW
SYYVFRKRVSHKEPMTY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=33.2417582417582, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787213, Length=366, Percent_Identity=28.4153005464481, Blast_Score=160, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYDB_BACSU (P94365)

Other databases:

- EMBL:   D83026
- EMBL:   AL009126
- PIR:   B69611
- RefSeq:   NP_391754.1
- ProteinModelPortal:   P94365
- EnsemblBacteria:   EBBACT00000003853
- GeneID:   937412
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38750
- NMPDR:   fig|224308.1.peg.3880
- GenoList:   BSU38750
- GeneTree:   EBGT00050000001285
- HOGENOM:   HBG413915
- OMA:   KEVYMEP
- PhylomeDB:   P94365
- ProtClustDB:   CLSK888122
- BioCyc:   BSUB:BSU38750-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003317
- TIGRFAMs:   TIGR00203

Pfam domain/function: PF02322 Cyto_ox_2

EC number: 1.10.3.-

Molecular weight: Translated: 37862; Mature: 37730

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf1c0be4)-; HASH(0x12098ab8)-; HASH(0x1349aa10)-; HASH(0x1306b768)-; HASH(0xf971910)-; HASH(0xe6203ac)-; HASH(0x1306fe4c)-; HASH(0x1343ccf0)-; HASH(0x134a5a00)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVW
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEE
LLTGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVV
EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
FFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVSDYINVYSILGGVTVTLLCFQHGLMF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHE
ITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGEITIPLAVLIVICF
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
MLAAVFIRKKKDGWTFGMTGAGLALTVGMIFISLFPRVMVSSLHSAYDLTVANASSGDYS
HHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
LKVMSIAALTLLPFVIGSQIWSYYVFRKRVSHKEPMTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure 
ASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVW
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEE
LLTGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVV
EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
FFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVSDYINVYSILGGVTVTLLCFQHGLMF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHE
ITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGEITIPLAVLIVICF
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
MLAAVFIRKKKDGWTFGMTGAGLALTVGMIFISLFPRVMVSSLHSAYDLTVANASSGDYS
HHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCC
LKVMSIAALTLLPFVIGSQIWSYYVFRKRVSHKEPMTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377